Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30639g00002 ATGGCAAAGGCGGTGTACAACTTGCTCCTTTCATTGTGTTTGGTTGTTGTGATACCAACCTTGCAAGCCAATATCTTAGAGAATACCACCACATATGTGGAGCAACATTTCGGAACGGTTGATGATGAATATTGGAAGGAAAGGGCTTCAGTTGCAAGGAAGTTGAGCGAAAATGCATATTTTCCTGACCCCCATGCACTTACTAGAAACTTCACTCTTACAGTTCAAAAAGACATAGCTAGCAGCAAGAAGATAAGAAGAAGCTTGAGTGGTAAACAAGTAGAGGGACCATGTGAGGCAACCAATCCCATTGACAGATGCTGGAGGTGTGACCCCGATTGGGAGAGCAACCGCCAAAAGCTTGCAGATTGTGTTCAAGGTTTTGGAAGAAAAACTACTGGAGGAAAGGGAGGTCCTATCTATGTAGTCACCGACCCTTCAGACAATGACATGGTTAACCCCAAACCAGGTACCATTCGCCATGCAGTCACAAGAAATGGGCCTTTGTGGATCATCTTTTCGCATAGCATGTCTATTAGACTCAATGAAGAGCTGATGGTGTCTAGTAACAAGACCATTGATGGAAGAGGAGTTGATGTCTACTTTAATAAGGGTGCAGGCATTACCGTCCAATACGCCAATAATGTGATCATCCATGGAATCAAGATTCGTGACATTGTTCCTGGTAACGGTGGACTTATTAGAGATTCCGAGGAGCATTACGGGTTTAGGACACGCAGTGATGGTGATGGAATCTCTATCTTTGGCGCCAGCAATATTTGGATTGATCATGTTTCCATGAGGAAGTGCTCCGACGGTATTATTGATGCCATTATGGGATCCACTGCCATTACCATCTCAAATAGTCATTTCACAGACCATAACGACGTGATGCTCTTTGGTGCCAATGAACAACACACCATTGATAAGGTGATGCAAATCACGCTAGCTTTCAACCACTTTGGTAAGAGATTGATTCAAAGGATGCCAAGGGCGAGATATGGATTTGTGCATGTTGTTAACAATGATTATACTCATTGGGAAATGTATGCCATTGGCGGTAGCAGTAATCCTACAATTATTAGTGAAGGCAATCGGTTCGTAGCTCCCGATGACAACAATGCTAAAGAGATCACAAAGAGAGTAACCAATGACGACTGGAAAGACTGGCAATGGAGATCAATGGATGATGTGTTTGAGAATGGAGCGTTCTTCATACAATCTGGACCAGAAATGAAAACCAGACCATTCGGACTCAAGGACATGATTACTCCAAAGCCTGGTTCATATGTGCAAAGGCTTACTCGTTATGCTGGCTCCCTTAAATGCAGAGTTGGTGAACCTTGCTAA 1350 0.4348 MAKAVYNLLLSLCLVVVIPTLQANILENTTTYVEQHFGTVDDEYWKERASVARKLSENAYFPDPHALTRNFTLTVQKDIASSKKIRRSLSGKQVEGPCEATNPIDRCWRCDPDWESNRQKLADCVQGFGRKTTGGKGGPIYVVTDPSDNDMVNPKPGTIRHAVTRNGPLWIIFSHSMSIRLNEELMVSSNKTIDGRGVDVYFNKGAGITVQYANNVIIHGIKIRDIVPGNGGLIRDSEEHYGFRTRSDGDGISIFGASNIWIDHVSMRKCSDGIIDAIMGSTAITISNSHFTDHNDVMLFGANEQHTIDKVMQITLAFNHFGKRLIQRMPRARYGFVHVVNNDYTHWEMYAIGGSSNPTIISEGNRFVAPDDNNAKEITKRVTNDDWKDWQWRSMDDVFENGAFFIQSGPEMKTRPFGLKDMITPKPGSYVQRLTRYAGSLKCRVGEPC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30639g00002 449 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Stsc30639g00002 449 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Stsc30639g00002 449 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Stsc30639g00002 449 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Stsc30639g00002 449 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Stsc30639g00002 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Stsc30639g00002 449 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Stsc30639g00002 449 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Stsc30639g00002 449 Pfam Pectate lyase 184 367 IPR002022 -
Stsc30639g00002 449 Pfam Pectate lyase, N terminus 42 89 IPR007524 GO:0030570
Stsc30639g00002 449 SMART amb_all 176 373 IPR002022 -
Stsc30639g00002 449 PANTHER PECTATE LYASE 18-RELATED 52 447 IPR045032 GO:0030570
Stsc30639g00002 449 Gene3D - 101 442 IPR012334 -
Stsc30639g00002 449 SUPERFAMILY Pectin lyase-like 102 440 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30639g00002 Stsc-Chr30639 31101 34139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30639g00002 1 449 Polysaccharide Lyase AT1G14420 57.839 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30639g00002 K01728 - gmx:100798579 640.573