LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30638g00001	ATGGACTCGAAAACTAGCTCTAGAGCTCTCCCAAAACATCACAGCACGACGAAGACGAGCAAACTGGAGCCAACTGCTCCCGAAGGCTCTTCGAAGTCTACACAGAACACAGGTAAGAAGGATACTGGGGAAGTTCCGGAAAGCAAGAACTTGGGAGCTTCGGTCCAGAAGGTGTCTGCTGATTCCTTGAGTCATAAATTTGCTGGTGCCACTATTGGTTCTTCCTCGTCTGTTCTTGGCAAAGCATCTAGAGAAGCGGATCACGGTGTTAACGAGAGCTTAGGCTCACTGGAGAACTCTGCAGATCAAGAGAAAAAGACATCAGAATATGGAAGCGTGAAGAGCAGTTCCGTTTCTGCGAAAGTTAGTGATGGGGCCAGCAGTCTTGCAAAGACAAGTGGGAGTGCTAAGATGAGTGATCGAGTCGATTTCGTTGAGAGTGGTAAGAGCAGTATTTGTAGAGGAAGTACAAGCAGTGATGTGAGTGATGAGAGTACCTGTAGTAGCTTTAGCAGCACCGTAAACAAGCCCCATAAGGCGAATGACTTGAGATGGGAAGCTATCCAAGCTGTTCGATCTAGAGATGGGGCGTTGGGTTTAGGTCACTTTAGACTGCTCAAGAGGTTGGGTTGTGGGGATATTGGCAGTGTATATCTCTCTGAGTTGAGTGGAACTAAATGTTATTTTGCAATGAAGGTAATGGACAAAGGGTCCTTAGCGAGTCGGAAAAAGCTACTTCGTGCTCAGACAGAACGAGAAATTCTGCAATCGCTTGACCATCCCTTTCTTCCAACTTTGTATACCCATTTTGAGACGGAGAAGTTCTCATGCTTGGTAATGGAATTCTGCCCCGGTGGAGACCTCCACACATTGAGGCAGAAGCAGCCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAGTTTTATGTGGCAGAGGTCCTGCTTGCTTTGGAGTACCTTCACATGCTAGGGATCGTCTACCGTGACCTTAAGCCGGAAAATGTCCTGGTTAGGGATGATGGTCATATTATGCTCTCTGATTTCGACCTTTCGCTCCGCTGTGCTGTCAGCCCGACACTTGTTAAAAGTGCGGCGACGGATTGTGAGCCTCTAAGAAAGAATCCTGTTTATTGTGTCCAGCCAGCATGTATTGAGCCGACTTCCTGTATCCAGCCATCCTGTGTTGCTCCTACTACATGCTTTTCCCCTCGGCTCTTCTCTAGCAAATCGAAGAAGGACCGAAAACCCAAAAATGAAATTGGCAACCAAGTTAGTCCGTTACCTGAGCTCATCGCAGAGCCTACTGATGCCCGGTCTATGTCATTTGTTGGAACCCATGAATACTTGGCGCCTGAGATCATTAAAGGAGAAGGCCATGGAAGTGCAGTTGATTGGTGGACTTTTGGAATCTTTCTATATGAGCTGTTGTTTGGTAAAACTCCTTTTAAGGGATCCGGGAACCGAGCTACATTGTTTAATGTTGTAGGTCAGCCTCTGCGGTTTCCTGAAGCACCTGTTGTCAGTTTCGCAGCGAGGGATCTTATAAGGGGATTGCTTGTAAAAGAACCTCAGCACAGATTGGCATATAAACGAGGTGCTACCGAGATCAAGCAGCATCCCTTTTTCGAAGGCGTGAACTGGGCATTGATCCGCTGCGCTACCCCACCCGAGATCCCCAAGCCCGTAGAGTTCGAGAAGATACCTTCCCCAGCTTCGTCAGCCGCTGAAAAGGCCGTCAATCACATGTCCATAGCGAATCAGAAGGGTTCGGATAATTATCTGGAGTTTGATTTCTTCTAG	1797	0.4769	MDSKTSSRALPKHHSTTKTSKLEPTAPEGSSKSTQNTGKKDTGEVPESKNLGASVQKVSADSLSHKFAGATIGSSSSVLGKASREADHGVNESLGSLENSADQEKKTSEYGSVKSSSVSAKVSDGASSLAKTSGSAKMSDRVDFVESGKSSICRGSTSSDVSDESTCSSFSSTVNKPHKANDLRWEAIQAVRSRDGALGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSAATDCEPLRKNPVYCVQPACIEPTSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKNEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEFEKIPSPASSAAEKAVNHMSIANQKGSDNYLEFDFF	598

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30638g00001	598	SUPERFAMILY	Protein kinase-like (PK-like)	180	568	IPR011009	-
	Stsc30638g00001	598	Gene3D	Phosphorylase Kinase; domain 1	196	288	-	-
	Stsc30638g00001	598	Pfam	Protein kinase domain	438	541	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30638g00001	598	Pfam	Protein kinase domain	204	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30638g00001	598	MobiDBLite	consensus disorder prediction	110	132	-	-
	Stsc30638g00001	598	FunFam	Serine/threonine-protein kinase D6PK-like	201	286	-	-
	Stsc30638g00001	598	SMART	serkin_6	203	541	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30638g00001	598	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	324	336	IPR008271	GO:0004672\|GO:0006468
	Stsc30638g00001	598	PANTHER	FLIPPASE KINASE 1-RELATED	30	565	-	-
	Stsc30638g00001	598	MobiDBLite	consensus disorder prediction	1	132	-	-
	Stsc30638g00001	598	CDD	STKc_phototropin_like	202	565	-	-
	Stsc30638g00001	598	MobiDBLite	consensus disorder prediction	20	41	-	-
	Stsc30638g00001	598	FunFam	serine/threonine-protein kinase D6PK-like	287	354	-	-
	Stsc30638g00001	598	Gene3D	Transferase(Phosphotransferase) domain 1	289	558	-	-
	Stsc30638g00001	598	FunFam	Serine/threonine-protein kinase AGC1-7	434	559	-	-
	Stsc30638g00001	598	ProSiteProfiles	Protein kinase domain profile.	203	541	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30638g00001	Stsc-Chr30638	7298	11168	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30638g00001	45	598	AGC Kinase Gene Family	AT5G47750	80.755	0.0	882

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Stsc30638g00001		Pkinase	1.6e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30638g00001	K08286		-	gmx:100781600	997.653