Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30635g00001 ATGGGTAGGAAAAAAAGTAAACCGCATCGATCGGGTGGGATAATAGTTGAAACAAATTCTACCGCTGAAGCAGAATTGGATAAACAGATTGCTGAAGGGACAAGTAAAGGAGTAAATGATGAATTTGAAGTTGATACACCCTATTTTGTTGAAGTAGATCGGTCTGGTTGGTTGTTAAGTGAGCACCTTGATGTTTCTGAGGTTGTCTTGAGTGACTTAAAGTTGACAGAAGGGTTTTCTGGTTTTGAACTGTTTGAGGATTTTTACCAGGATCCACAGTACTCATTGAGATTTCGAGTGTATAATGTCAATAATGTTCTTAGTCGAATCAAATTAGGTCATTGGCCTGTGTTGCCCTATGCTGATATTCATCTTGAGCTTGTGAAAAGGGATGCAGTAGATAATTTGGAAACATATACCGTGCTGTTGTCTGGGATTTTTGATGGGCCTGATGAAGGTGTTTCTGGCCTTGTTCACTTGGCAAGTTTGAAATTTTTCACGTTAAGGCCAGTTCTTGGGATTAGGGTTTCAGAAGATATTTCTTCTCTCAGGGTAAGAGTTGAAATACTAAAGTGTGCCTTTGATGCTTGTGAGTCACTTCTTGATGTGTCTAGACAACTATGGAAAAGGAGTATGATGAATGTCATGTCCTGGCTACGCCCAGAAATAATAACTTCAGAAGTTAGGTATGGATTTGATAGCTGTATGAACATGGAAGTTGATCCACAGGCAGATAACATAAATAACACATCCAGCACCAGAAAACTCACAAGATTTGATCCTGCTGGTTTTTATGAAGCCATTAAGCGTTCAAATGGAAATATTTCTTTGTGCCTGGAGACATCTTCCCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGTTTGGGAAAATCTGTTGAATTGCTTGCTTGCATCTTTGCTCACCGGAGATCAGCATCTGAAAGTGATATAGTAATTGATCCAGTGCCTCAAGTTAATGAAGACCAAAAAGTCATTTTAAAAAGACTTAAAAGGGAGCGTGTGGAGTGTATTTGTGGATCTGTGAGTGAAAGTATCAAATACGAAGGACTATGGGTTCAGTGCGACATTTGTGATGCTTGGCAGCATGCAGATTGTGTTGGTTATTCGGCTCGAGGAAAATCTCTGAAATCAAAACATGGATGTGAAGGCAAGACTTATAAAACTACGATAGCTGTAAGGGATGGTGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGTGACTGAATCTCCCATTGCATCGGGTGCCACTCTTATTGTCTGCCCAGCTCCCATTTTGCCCCAGTGGCATGATGAAATTATACGCCATACGCGCTCGGGCTCCTTGAAAACTTGTATTTATGAAGGTGTGCGGGATACTTCTTTATCCAACACATCTATGATGGATATTAGTGAACTCGCCACTGCTGACATTGTGTTAACTACCTATGACGTGCTTAAAGAGGATTTATCCCATGATTCTGATAGACATGATGGTGATCGACACTTTTTGAGATTTCAAAAGAGGTACCCAGTTGTCCCAACTCTTCTTACCAGGATATATTGGTGGAGGGTTTGTTTAGATGAGGCTCAAATGGTGGAAAGTAATACTGCTGCTGCCACTGAAATGGCTCTAAGACTCCATTCTAAGCATCATTGGTGCATAACAGGAACCCCAATTCAGCGCAAGCTTGATGATTTATATGGGCTGCTAAGATTTCTTAAAGCTAGTCCTTTCAATACATACAAGTGGTGGACTGAAGTTATTCGAGATCCTTACGAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCCGATGAATTGGACCTTCCCTCTCAGGAGGAGTGTCTCTCTTGGCTTACACTCTCCCCAGTAGAAGAGCACTTTTATCAGAGGCAACATGAAACCTGTGTCATAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATCCTTAATAGAAAAGGTTCTGCATCTTTGAATGGTCTGTCAGATTCTTTAATCACTCACTCAGAGGCAGGGAAGCTACTGCATGCTCTGCTGAAACTTCGTCAGGCTTGTTGTCACCCCCAAGTTGGAAGTTCTGGTCTGCGTTCCCTTCAGCAATCACCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACAAAGGTAGAAGGTGAGGAAGCTCTTAGAAGGTTAGTTGTTGCTCTGAACGGGCTTGCAGCAATAGCAACAATACAAAACGAATTTTCTCAAGCTGCATTGCTGTACCACGAAGCTCTGACATTGGCTGAAGAGCATTCTGAGGATTTTCGCTTGGATCCTTTGTTAAACATCCACGTCCATCACAATCTTGCCGAAATGCTCCCACAGGCTGCAGACCTTAGCCTGAGAGTGCCCTCTAAAGGAAAGCAGTTCTGTCGAACATCTAGAAAGCATTTTATTGACAGGGTTGATCATTGTCCTTTGAAGATGCAAAAAGTAAGCAGCTCTAATGACATAAAATTTTCAGCAGCTTCGGTAGAACTATCTGACACTACATCCAGCCTTTTAGAAGATGACTTAAATGAGGATCTGGTTGTTAATGCTGCCTCTGTCTGCACTGTCAAATCTCTGAGAGCTGAATGTGAAGATTTGAAGCAGAAATACTTGTCTGTGTTCAGTACAAAACTATATGCAGCTCAACAGGAGTTTCAAAACTCATACATGCAGGTTAGTAATGGATTTAGTGATGGCAAAGCAGAACAAAATATGTTTTGGTGGCTAGAAGTACTTCATCATGCTGAACAGAACAAGGATTTCTCAACTGAGTTGACTAGAAAGATTGAAGAAGTGATCTCAGCAGCTGCAAATAGTTCAAAGTCATCCAAAATAGCTGCTCGTTTCCGGAGCATATCATCTCTGAAGTATCAAATTCAGACAGGCTTGGATCAGTTAGAAACCTCTCGGAAAGGTCTACTTGATCGACTACTAGAAATTGATCAAACAATGGAGAAACCAAATGATGAAGATATTGACCGTATGGGTAAATGTCAAAATTGCCAACCTAATTGTGATGGTCCCCCATGCATTCTGTGTGAACTAGATGAACTATTCCAGGATTATGAAGCAAGACTATTTGTTCTTAAGAATGAACGCGGTGGAATAATTTCATCAGCTGAGGAGGCAGTAGATCTTCAGAAGAAGAATTTTGCATTGAATCATTTCCTCTCAAAGCTATCAAAATCTAATCACAGAGCAACAGTATCTGAAATTGATAGTGAAGATTCAAAGAGAAGGAATGTTGGGCAGAGAGTTGTGGTTTCGAGATCAGCATCTGAATTGGAGCTTATTCTTGGTGTTATAAAGAACTATTGCAAGAGTCGATTGGGAAGGGACGTTGTCTCTGCAGCAACCAAGCATTTACATGTGTTTGAGGGAATGAGGAAGGAGTTTGGTCATGCGAGGTCTTTGGCTTTAGCTCAAGCTCAGTACTTGCGTGCCCATGATGAAATAAAGATGGCTGTTTCCCGTTTGCACTTAAAGGCAAATGAGGATGATAAATCTCTCGATGCTTTAGGTGAAGATGAGCTATTTGCAGCTAGCTCAAACTTTTCACATGATAAGTTTATGTCGTTGAATATGTTGTCGCAGATAAAAGGAAAGCTCCGCTACTTAAAGGGGTTGGTACAATCTAAGCAAAAGCTGCCATTGGGAAGAAGTCCTGCTAGTTCTTCATTCACTCAAGAGATAACTGCATTGCCAAACTCTACAGAAGAGAGGGGTGCAGTCATATTTAAAGCTGATGAGGAAACCTGTCCAATTTGCCAAGAAAAGCTTGGCAGTCAGAAAATGGTATTTCAATGTGGGCATCTTACGTGTTGCAAATGTTTATTTTCTATGACTGAGAATAGGCTTCAACATAGCAAGGTTCACAATTGGGTTATGTGCCCAACATGTCGACAGCATACAGATTTTGGAAGCATTGCTTATGCTGTTGATGCACAGAATGAATCTCCTAATTCTACAATGTCTAATACACTTGACAACTGTGAAAAAAGTGAAGCATCCATTATTGTCAAGGGCTCATATGGAACTAAGATTGAAGCGATCACTAGAAGAATCTTGTGGATAAAGGCTACAGATCAAAACGCAAAAGTTCTTGTGTTTTCAAGTTGGAATGACGTACTTGATGTATTGGAACACGCCTTTGCTGCAAATGACGTTACATTCATCCGCATGAAAGGAGGCAGG 4281 0.4074 MGRKKSKPHRSGGIIVETNSTAEAELDKQIAEGTSKGVNDEFEVDTPYFVEVDRSGWLLSEHLDVSEVVLSDLKLTEGFSGFELFEDFYQDPQYSLRFRVYNVNNVLSRIKLGHWPVLPYADIHLELVKRDAVDNLETYTVLLSGIFDGPDEGVSGLVHLASLKFFTLRPVLGIRVSEDISSLRVRVEILKCAFDACESLLDVSRQLWKRSMMNVMSWLRPEIITSEVRYGFDSCMNMEVDPQADNINNTSSTRKLTRFDPAGFYEAIKRSNGNISLCLETSSPYVFGGILADEMGLGKSVELLACIFAHRRSASESDIVIDPVPQVNEDQKVILKRLKRERVECICGSVSESIKYEGLWVQCDICDAWQHADCVGYSARGKSLKSKHGCEGKTYKTTIAVRDGEYVCQMCSELIQVTESPIASGATLIVCPAPILPQWHDEIIRHTRSGSLKTCIYEGVRDTSLSNTSMMDISELATADIVLTTYDVLKEDLSHDSDRHDGDRHFLRFQKRYPVVPTLLTRIYWWRVCLDEAQMVESNTAAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKASPFNTYKWWTEVIRDPYEKGDMGAMEFTHRVFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVIDAHEVIESLRNDILNRKGSASLNGLSDSLITHSEAGKLLHALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKVEGEEALRRLVVALNGLAAIATIQNEFSQAALLYHEALTLAEEHSEDFRLDPLLNIHVHHNLAEMLPQAADLSLRVPSKGKQFCRTSRKHFIDRVDHCPLKMQKVSSSNDIKFSAASVELSDTTSSLLEDDLNEDLVVNAASVCTVKSLRAECEDLKQKYLSVFSTKLYAAQQEFQNSYMQVSNGFSDGKAEQNMFWWLEVLHHAEQNKDFSTELTRKIEEVISAAANSSKSSKIAARFRSISSLKYQIQTGLDQLETSRKGLLDRLLEIDQTMEKPNDEDIDRMGKCQNCQPNCDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDLQKKNFALNHFLSKLSKSNHRATVSEIDSEDSKRRNVGQRVVVSRSASELELILGVIKNYCKSRLGRDVVSAATKHLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLKANEDDKSLDALGEDELFAASSNFSHDKFMSLNMLSQIKGKLRYLKGLVQSKQKLPLGRSPASSSFTQEITALPNSTEERGAVIFKADEETCPICQEKLGSQKMVFQCGHLTCCKCLFSMTENRLQHSKVHNWVMCPTCRQHTDFGSIAYAVDAQNESPNSTMSNTLDNCEKSEASIIVKGSYGTKIEAITRRILWIKATDQNAKVLVFSSWNDVLDVLEHAFAANDVTFIRMKGGR 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30635g00001 1427 Pfam Zinc finger, C3HC4 type (RING finger) 1282 1329 IPR018957 GO:0046872
Stsc30635g00001 1427 SUPERFAMILY RING/U-box 1277 1335 - -
Stsc30635g00001 1427 CDD DEXQc_SHPRH 288 618 - -
Stsc30635g00001 1427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 1426 IPR027417 -
Stsc30635g00001 1427 SMART ring_2 1282 1329 IPR001841 -
Stsc30635g00001 1427 CDD PHD_TCF19_like 346 390 - -
Stsc30635g00001 1427 ProSitePatterns Zinc finger PHD-type signature. 345 411 IPR019786 -
Stsc30635g00001 1427 SUPERFAMILY FYVE/PHD zinc finger 341 414 IPR011011 -
Stsc30635g00001 1427 SMART ultradead3 252 588 IPR014001 -
Stsc30635g00001 1427 ProSiteProfiles Zinc finger RING-type profile. 1282 1330 IPR001841 -
Stsc30635g00001 1427 SMART PHD_3 344 412 IPR001965 -
Stsc30635g00001 1427 ProSiteProfiles Zinc finger PHD-type profile. 342 414 IPR019787 -
Stsc30635g00001 1427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1271 1350 IPR013083 -
Stsc30635g00001 1427 Gene3D - 278 370 IPR038718 -
Stsc30635g00001 1427 Gene3D - 392 639 IPR038718 -
Stsc30635g00001 1427 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 3 272 - -
Stsc30635g00001 1427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 616 IPR027417 -
Stsc30635g00001 1427 Gene3D - 1352 1427 IPR027417 -
Stsc30635g00001 1427 Pfam SNF2-related domain 285 712 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30635g00001 Stsc-Chr30635 708 11741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30635g00001 419 710 RAD5 or RAD16-like Gene Family AT5G22750 29.966 3.59e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc30635g00001 SNF2_N 7.9e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30635g00001 K15710 - gmx:100776659 1905.57