Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc30624g00009 | ATGAGTCAACTCGGCGTTATTCTTCAGGAATCGCTGCGGACTCACACGGAGCCAAGGACCATTCTCGGATTGTTGACGGAGCAAATGGACGCTGCTGCCGCCGCCGCCGATGGACCGCCTCGCACCAGGACCAGGCGCACCTTCAAGGACCGCTTAGGATTCATCGGCATAGGCTGTTGCGGTGCCACGTGGCGATTCCGTTCGGATTCCATAACGGTCAGGCACGAAGAACAAGAACAGCAGCTCCAGCAGCAGCAGCAACCACAGCAACAGCACCAACCGCTTCTTCTTGAAACGAATCCGCCTCGAGATCCGAACCGTTTTGGACCCGACTGCCTGTCTCCGACTCCGGCCAGTTCAGGTATGAACCTCGCGGCGGCGTTGGCGGCTGAACGGCAGCTCCGGGGGCCTCCAGCGGAGGCGGAGGTACAGGAGAGAAGGGGAAGGAGTAATGTGCCGGGGACGCCGTGGAGAGTGTCCCTGATGAGGCTGCTGGAGGAGACAGACGGCGGCGATGCAGAGATTAGTGCGGCGGGGAAGGGGAAGACATCGGAAGAAGAAAAAATAAGTGGTGTGGGGAATGATTGGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCAGCGTTCATACCATGTGGTCACACTTTTTGCAGGGTTTGTTCAAGGGAGCTCTGGCTCAACCGAGGCTCTTGTCCCCTTTGCAATCGTTCCATTCTCGAGATTCTCGACATTTTCTGA | 741 | 0.5803 | MSQLGVILQESLRTHTEPRTILGLLTEQMDAAAAAADGPPRTRTRRTFKDRLGFIGIGCCGATWRFRSDSITVRHEEQEQQLQQQQQPQQQHQPLLLETNPPRDPNRFGPDCLSPTPASSGMNLAAALAAERQLRGPPAEAEVQERRGRSNVPGTPWRVSLMRLLEETDGGDAEISAAGKGKTSEEEKISGVGNDWVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc30624g00009 | 246 | ProSiteProfiles | Zinc finger RING-type profile. | 198 | 236 | IPR001841 | - | |
| Stsc30624g00009 | 246 | PANTHER | OS01G0917900 PROTEIN | 5 | 246 | - | - | |
| Stsc30624g00009 | 246 | MobiDBLite | consensus disorder prediction | 77 | 97 | - | - | |
| Stsc30624g00009 | 246 | CDD | RING-HC | 198 | 235 | - | - | |
| Stsc30624g00009 | 246 | SMART | ring_2 | 198 | 235 | IPR001841 | - | |
| Stsc30624g00009 | 246 | SUPERFAMILY | RING/U-box | 194 | 243 | - | - | |
| Stsc30624g00009 | 246 | MobiDBLite | consensus disorder prediction | 75 | 120 | - | - | |
| Stsc30624g00009 | 246 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 176 | 246 | IPR013083 | - | |
| Stsc30624g00009 | 246 | Pfam | Zinc finger, C3HC4 type (RING finger) | 197 | 240 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc30624g00009 | Stsc-Chr30624 | 42161 | 43560 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc30624g00009 | 21 | 246 | C3H Transcription Factor Family | AT4G22250 | 48.927 | 1.21e-57 | 181 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc30624g00009 | - | - | pcin:129286609 | 263.077 |