Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30624g00004 ATGGCACTAATGCAGCGCCTAGCTAGAACCGCACGTCCGCTTCGATCTCATTCTCTCTATTCCCTCCGAAACCTAACCTCTCGCCCTCTTTCCCCTTCTCTTCCTCACAAATCAGCACTTGCTTCGTTCGCCGCGCCTCAAGTTTGCGGATCCGGAGCCTCACGTGATGACTATCAGGTACCGTATTCGTTACTTCCGGCTATGTTAGCTGGCTTTCTCGGAATTGGATTGGCGGAAACGGCGTATGCTGATGCGGATCACGGTGGCGTTGCCGGCGGCGAGGATGTGCACGGAGTTGCGAAGAAAGAACGCGAGCGCATTGAGGAGTTGCTTAGGAAGAAAGGAGTTCGTTATGGTTCTTATCCTCGCTTCACTGTTGCTGTTAAAGGACAAAAGGTCAGTGTTAAGTTTCAGATACCTCCTGCCTGTGAAGTTCCGCAACTTATTGCAAGTCTCACAACAAATCTTGGACTGAAAGCTGAAGGGAATGGAGGTGGATCAGATATGCTATTGCGATCTTGGGACAGCACAGTGGCTTGGCAGCTTGCCCTTACTCATCCGTCCAAGAAAAAGCATATTCACGGGGAGGATCCATCTTCAGCAAATATAAATGGACCTGATGAAGATCTTTGCATACTCTTTTTCCATTCTCTCATTGGCTCAGATAAAGCTGAAATTGAATTTATTAAGCAAGGGAACTTGAGTCCTGAAGAGCTTGATGCTTTCATCTCTGTTTTACAATTAGCTGGTAGCAGGATGGGACAAAGAAGTGCCCCCCTGGAAAGGAAGCAAAGGGAAGAGACTGAGCAGTCGTCTGTAGATAAATCTATTTCTAGTCTTGAGGCCATGGGAGTGAGAATTTATGGATTGAAAGAACCCATAGGTATATCAAATGGTGAGGTATCATGGGACAACATTGCTGGATATGAACATCAAAAACGCGTAATAGAAGATACAATACTGTTGGCTTTGCATAGTCCTGAAGTATATGACAATATTGCACGAGGGACTCGTCATAAGTTTGAGTCAAACCGCCCTCGAGCTGTGCTGTTTGAAGGTCCACCGGGTACAGGGAAAACTTCTTGTGCTCGTGTTATTGCCAATCAAGCGGGCGTCCCGTTGCTATATGTTCCACTTGAGGCCGTAATGTCTGAATTCTACGGTAAAAGTGAACGCCTTCTAGGAAAAGTGTTTTCACTTGCAAATGAACTTCCTAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCTCGGGATAATGAAATGCATGAAGCTACAAGGAGAATATTGTCAGTATTGTTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTGGTCGTGATTGCTGCTACCAATAGAAAGGAAGACCTTGACCCTGCACTAATCAGCCGGTTTGATACGATGATCCCTTTTGGCTTACCTGATCATCGCAATCGTCAGCAAATAGCATCCAAATATGCAAAGCATCTAACCAAACCTGAACTAGATGAACTTGCCAGAGTTACAGAAGATATGTCCGGAAGAGACATTCGTGATGTTTGTCAGCAAGCAGAACGATCATGGGCATCAAAGATTATTCGAGGACAAATATCCAAAGATGGTGAACATGAAAATCTTCCACCTTTGCAAGAATATGTAGAGTGCGCCACAATTCGGCAAAACTCACTGCTCAGTGCTGCTGCTGGCAGGAATTTCCGAAATCATTCCCATCTGAGGATGGCAACGGAGTGA 1746 0.4542 MALMQRLARTARPLRSHSLYSLRNLTSRPLSPSLPHKSALASFAAPQVCGSGASRDDYQVPYSLLPAMLAGFLGIGLAETAYADADHGGVAGGEDVHGVAKKERERIEELLRKKGVRYGSYPRFTVAVKGQKVSVKFQIPPACEVPQLIASLTTNLGLKAEGNGGGSDMLLRSWDSTVAWQLALTHPSKKKHIHGEDPSSANINGPDEDLCILFFHSLIGSDKAEIEFIKQGNLSPEELDAFISVLQLAGSRMGQRSAPLERKQREETEQSSVDKSISSLEAMGVRIYGLKEPIGISNGEVSWDNIAGYEHQKRVIEDTILLALHSPEVYDNIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAVMSEFYGKSERLLGKVFSLANELPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMIPFGLPDHRNRQQIASKYAKHLTKPELDELARVTEDMSGRDIRDVCQQAERSWASKIIRGQISKDGEHENLPPLQEYVECATIRQNSLLSAAAGRNFRNHSHLRMATE 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30624g00004 581 CDD RecA-like_protease 334 476 - -
Stsc30624g00004 581 SMART AAA_5 345 480 IPR003593 GO:0016887
Stsc30624g00004 581 MobiDBLite consensus disorder prediction 254 275 - -
Stsc30624g00004 581 Pfam ATPase family associated with various cellular activities (AAA) 349 477 IPR003959 GO:0005524|GO:0016887
Stsc30624g00004 581 MobiDBLite consensus disorder prediction 258 272 - -
Stsc30624g00004 581 Gene3D - 300 478 IPR027417 -
Stsc30624g00004 581 Gene3D - 479 538 - -
Stsc30624g00004 581 ProSitePatterns AAA-protein family signature. 450 469 IPR003960 GO:0005524|GO:0016887
Stsc30624g00004 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 527 IPR027417 -
Stsc30624g00004 581 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 273 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30624g00004 Stsc-Chr30624 11561 16070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30624g00004 345 545 Calmodulin-binding Proteins AT3G56690 35.885 2.42e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30624g00004 - - gmx:100803362 840.106