Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30622g00002 ATGAGGGTCTTCGCATACTTTGACTCAACATACTTATTCACCGCATTTACCGCTCCGTGCAAGCCTAATGCAGATGCGGTAAAGGTCCAGAAAGTGAATGATGTTCTGATGCGCATGCTAAGAAAATCAACAAGGAGGAGGTTAGAGAGTGTGATGGAGTGGAGAGAGGCTCGTTTCAGAAGGCGACGAGATGATCGTTGGCACGATGACGACAGAAGGTTGAACATCCATACCAAAGAGTGGAATACACATACAGTATTCGTAGATAACTTAATTCCAGAGATAACGAGAGGGGACCTGTACCGTATGTTTGGGTGGCAAGGGGAGGTCAGAGATGTGTTCATCTCTAGGAAAACCAGAAGAGGTACGAGTAGTCCCTTCGCTTTTGTAAGATACGATTTGGCAGGAGGAGCGGAAAGAGCTGCTAGGAAACTAAATGGAACAGTAATGAGGGGTCGAAGGGTATCAGTCACGCACGCCCGTTTTGGAAGAGATCAAAAACTTCAGGGAGTGCACAGGAAGAACCACCAAGGATGGGAAAGGCGCGACGAAACAGAACATAACAATAGGGAGACTACAGGGAAGGCTATAACAATCAGAGATGAAGACCAAAACGGAATGTAG 624 0.4663 MRVFAYFDSTYLFTAFTAPCKPNADAVKVQKVNDVLMRMLRKSTRRRLESVMEWREARFRRRRDDRWHDDDRRLNIHTKEWNTHTVFVDNLIPEITRGDLYRMFGWQGEVRDVFISRKTRRGTSSPFAFVRYDLAGGAERAARKLNGTVMRGRRVSVTHARFGRDQKLQGVHRKNHQGWERRDETEHNNRETTGKAITIRDEDQNGM 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30622g00002 207 MobiDBLite consensus disorder prediction 169 207 - -
Stsc30622g00002 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 155 IPR000504 GO:0003723
Stsc30622g00002 207 MobiDBLite consensus disorder prediction 169 198 - -
Stsc30622g00002 207 Gene3D - 42 199 IPR012677 -
Stsc30622g00002 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Stsc30622g00002 207 SUPERFAMILY RNA-binding domain, RBD 78 179 IPR035979 GO:0003676
Stsc30622g00002 207 CDD RRM_SF 86 157 - -
Stsc30622g00002 207 SMART rrm1_1 85 158 IPR000504 GO:0003723
Stsc30622g00002 207 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 82 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30622g00002 Stsc-Chr30622 7283 7992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30622g00002 86 161 Eukaryotic Initiation Factors Gene Family AT1G34140 35.526 5.51e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30622g00002 K12891 - ahf:112794598 111.309