Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30622g00001 ATGGCTTCCCTATCAACCTTCTCCAAATTCCTCACTCTCTTATTCCCGCCAAAATCACAACCACCACCATCACCATCACCGCCACCACCAAACATCGCCCTCCCCAAACCCTCACACCATGTAGCACCGCTCGATCAGGCTGATCGCTTTACACCTTATAACTGTTCATCGTCTCCGTCGTCGTTGTCGTCGGTGATGTGCCCGTCGCTGGCGCACGCGAACACGATGTGGTTCAAGTCAGCGTACAACGTGGAGGTGGTGGTGGATGAGAACGAGGCGGAGGAGAAGCTTCTGAACCGGTTCCGAAGAGAAGTGATGAAAGCTGGCGTCATCCAAGAGTGCAGAAGAAGAAGGTACCATGAAGACACACAGGACAAGCGCAAGCGCAAGTCACGTGAGGCTGCCAAGCGTAACCGCAGAAGGCGCCCGCAGTCAAAATCATTAGCAGAAAACAAGCAGGCTATCACAAACACCAAAAAGAAAGAAGATGATGATGATAACTGGGATCTACCTGAACACAATTCTCCATCTGCAGATTGCTACGACCCCTTGGATCCAAATGGCAACATTTCAGTCACTTTTGACATTTACCAACGCACAGATGATGATGGATACCTGGCAAGGGTGACAATTGAGAACTACTATAAGTACAGGCATGTGGACAAACCAGGTTGGCAACTTGGATGGCAATGGGCAAAGAATGAAGTCATATGGTCAATAAAGGGTGCAGTTGCAACAGATCAAGGCAACTGCTCTTCTTACACCAATCAGTTACCACATTCTTGCGAGAAAGACCCACTCATAGTTGATCTCCCCTCAGATGTGTCCCCTGAGAGCAGATCAGAACACTGCTGCAACGACGGCGTCCTCTCGGCTCGGGCCATCGATCCTTCGCACTCGTTCTCCTCATTCGAGCTTGAAGTACGCAGATTGGGGCAATACCCTCTTGGACAAGCTCCTAATAACCTCACACTCATGGCTCCTGGTCCTGGCTATTCTTGTTCCCCTCTTCTTGAGACTCATCCCACTATCATCTCATCTTTTGGTGGACAAAGACAAGTTCCTGCTCTCAGAACATGGAAGTCAGCATGTACATACTCGAATTTCATGGCGAGCAAGTCACCAATATGCTGTGTATCCCTATCAACCTTTTACAACCCTGAGATCACACCATGCCCTGATTGCAGCTGTGGATGCAGTGCAGCAGACAAAGCTTCCAAGTCTTGCATAAGGCTAGGTGATCCCTTATCAGGAGAGTCATCAACAGAGGAGAACATAATGGCATGCACGAAGCACATGTGCCCAATTCGAGTTCATTGGCATGTTAAGAACAACTATGTAAATCACTGGAGGGTGAAGCTTACCATTTCTAACTACTATTATAGGAAAAACTACTCTAACTGGAACGTGCTGCTCCAACATCCTGGATTCTCTCATAATGCAACTTCTTACAGCTTCAACAGTGCCAAACTTCCCCTTCCATTTCAAGATGGAGTTGCTCTGTTTTGGGGGATCGATTATTACAACAACGAACTAGTGCATTCAGATAAGGATCAACAAGGTTTTGTGTCAACAGAGATACTATTAGAGAAAGATAGAAAATCTTTTACTTTGAGTCATGGATGGGCTTTTCCAAGGAGGATATATTTCAATGGCGAAAACTGTGAAATGCCATTGCCTGACTCATTTCCTATGCTTCCAAATCATAGCAACACTTTGAGACCTACCGACTGTTGTGGTGGTTTCATTATTCTTTTACTCATATCTTTGTTATGTTTCTGGAACAAAGGTTCCTTTGACTTTCAATGTTGA 1812 0.4625 MASLSTFSKFLTLLFPPKSQPPPSPSPPPPNIALPKPSHHVAPLDQADRFTPYNCSSSPSSLSSVMCPSLAHANTMWFKSAYNVEVVVDENEAEEKLLNRFRREVMKAGVIQECRRRRYHEDTQDKRKRKSREAAKRNRRRRPQSKSLAENKQAITNTKKKEDDDDNWDLPEHNSPSADCYDPLDPNGNISVTFDIYQRTDDDGYLARVTIENYYKYRHVDKPGWQLGWQWAKNEVIWSIKGAVATDQGNCSSYTNQLPHSCEKDPLIVDLPSDVSPESRSEHCCNDGVLSARAIDPSHSFSSFELEVRRLGQYPLGQAPNNLTLMAPGPGYSCSPLLETHPTIISSFGGQRQVPALRTWKSACTYSNFMASKSPICCVSLSTFYNPEITPCPDCSCGCSAADKASKSCIRLGDPLSGESSTEENIMACTKHMCPIRVHWHVKNNYVNHWRVKLTISNYYYRKNYSNWNVLLQHPGFSHNATSYSFNSAKLPLPFQDGVALFWGIDYYNNELVHSDKDQQGFVSTEILLEKDRKSFTLSHGWAFPRRIYFNGENCEMPLPDSFPMLPNHSNTLRPTDCCGGFIILLLISLLCFWNKGSFDFQC 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30622g00001 603 MobiDBLite consensus disorder prediction 119 184 - -
Stsc30622g00001 603 PANTHER PROTEIN COBRA 178 572 IPR006918 GO:0010215|GO:0016020
Stsc30622g00001 603 MobiDBLite consensus disorder prediction 155 172 - -
Stsc30622g00001 603 Hamap 30S ribosomal protein S21 [rpsU]. 83 139 IPR001911 GO:0003735|GO:0005840|GO:0006412
Stsc30622g00001 603 Pfam COBRA-like protein 205 367 IPR006918 GO:0010215|GO:0016020
Stsc30622g00001 603 NCBIfam 30S ribosomal protein S21 84 141 IPR001911 GO:0003735|GO:0005840|GO:0006412
Stsc30622g00001 603 Coils Coil 84 104 - -
Stsc30622g00001 603 MobiDBLite consensus disorder prediction 16 36 - -
Stsc30622g00001 603 MobiDBLite consensus disorder prediction 15 39 - -
Stsc30622g00001 603 Gene3D Ribosomal protein S8 98 136 IPR038380 -
Stsc30622g00001 603 PRINTS Ribosomal protein S21 family signature 87 95 IPR001911 GO:0003735|GO:0005840|GO:0006412
Stsc30622g00001 603 PRINTS Ribosomal protein S21 family signature 107 117 IPR001911 GO:0003735|GO:0005840|GO:0006412
Stsc30622g00001 603 PRINTS Ribosomal protein S21 family signature 119 129 IPR001911 GO:0003735|GO:0005840|GO:0006412
Stsc30622g00001 603 PRINTS Ribosomal protein S21 family signature 95 104 IPR001911 GO:0003735|GO:0005840|GO:0006412
Stsc30622g00001 603 Pfam Ribosomal protein S21 85 139 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30622g00001 Stsc-Chr30622 2305 6630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30622g00001 179 590 COBRA Gene Family AT3G29810 47.242 2.71e-130 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30622g00001 - - ccaj:109801855 634.024