Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30621g00003 ATGGAGTCTTGGAGTTATGTTTCTGAAGAGAAGGGTTATGTCTCAAACGATGCAATTTCCCCTCCCAACACTCTTGGGAGGAACACCAAAGGTTCTTTCTTGGGTTGGGAACTGAAAACCCCAGGTGGTTTTTCAATTGAGAATCAAGGTTTTGAGGAATTGGGGTTGCCCCAAGATCCTAATAATCCAATTGGTAATGTTCGTAGTAGTAGAAAGATTGATACTGACCCTGTCATGGCTACTCCAAATGCATTCTCTTCAAGAGAGGACTTCAATTCCAAGGTTTCAGCCTCTTTGGGGGACTCTAATGGTGGTGGCTGTGATTCACTCATTGACTTGAAGCTTGGTAGGTTTCCTGATCATGGTGATGTCGGTGTGGTGGCTCCGGCATTCTCGAAAGGGGCCCCTATTTTGTCGTCGTCGGAGTCTTCCACGCCGACGAAGAGGGTTCGTGCTTCCGGGGCTCACTCCCAGACAGCATACTGCCAGGTCTATGGATGCAACAAAGATTTGAGTGGTTGCAAGGATTACCATAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAGACTTCCAAGGTTATTGTCAATGGTATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTCGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAACGAGCGGCGAAGAAAACCACAAGTGGGTATACACTCCGGAAAGCCTGGGAGGTTGCTTCAGCCTTATGAAAGCAGATTCCAAGGAAACATGCTAACATCAGCATCTTTCATCTGCCAAGAGATACTCCCTGCCGGGGTCTTATCCTCCGAGAGATATGGAACAAGTGACTGGTGGAGACCTATAAAATCCGAAGACAGCGCCGGCTTTAGGCATATTTCTTCTATTCCTATCTCTAATGGACACCCTCCTGAGTCACGACCCCTGTTTGCTTCATACAATGAGAAGCAATTTCCCTTTCTGCATGAAAATAATGGCGCTACATCCGGCTCGAGTAGTATCTTCTGCGAAAATAATAGCTCATATCCAGCTGCCATAGGAGGCGCGAACTCGGGGTCCCAATCATTATTCCAGGACACTTCCATAGGAAGCGAGGACTTCAATGTTTTTGATACAGAATCAGCTGTTCAAGGGCTATCTGGAATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAACTCTTCAAGCCAGTCATCTGGAATTCCCGTGGCTCGCTCGATGGTCATTCGGACCATGACCAGCCATAGCAGTAGCCATTACGCCATGAGCCAGGTCTCTGAAAAGATGATAGGAATAAGCTCCCAAGCTTCGAGTGGTGTCTCCGATAGGTTTCCGTCCGAGTTGAATCCTGCAGATGGAAGTCCTCTTAGCTCTGTGCTGATACCTGACAACAATGACATTGTCAACTTTGAAATGGCTGATGGAATGTTCCAAGGGTCGGATTTCGTGAATGTGAAAGATCGTCTCTCATGTGATGATGTCCCGACTATCGACTTGCTTCAACTTTCTTCGCAGCTTCAGCGAGTCGAGAACGAGAGGCAATCCTTGCAGGTCAAGCAAGAAAACGATTCATCCGTCTCTCTCCGGATTACTTAA 1638 0.4683 MESWSYVSEEKGYVSNDAISPPNTLGRNTKGSFLGWELKTPGGFSIENQGFEELGLPQDPNNPIGNVRSSRKIDTDPVMATPNAFSSREDFNSKVSASLGDSNGGGCDSLIDLKLGRFPDHGDVGVVAPAFSKGAPILSSSESSTPTKRVRASGAHSQTAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKPGRLLQPYESRFQGNMLTSASFICQEILPAGVLSSERYGTSDWWRPIKSEDSAGFRHISSIPISNGHPPESRPLFASYNEKQFPFLHENNGATSGSSSIFCENNSSYPAAIGGANSGSQSLFQDTSIGSEDFNVFDTESAVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPVARSMVIRTMTSHSSSHYAMSQVSEKMIGISSQASSGVSDRFPSELNPADGSPLSSVLIPDNNDIVNFEMADGMFQGSDFVNVKDRLSCDDVPTIDLLQLSSQLQRVENERQSLQVKQENDSSVSLRIT 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30621g00003 545 FunFam Squamosa promoter-binding-like protein 14 153 223 - -
Stsc30621g00003 545 Coils Coil 513 533 - -
Stsc30621g00003 545 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Stsc30621g00003 545 Pfam SBP domain 162 235 IPR004333 GO:0003677
Stsc30621g00003 545 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 96 464 IPR044817 GO:0003677
Stsc30621g00003 545 Gene3D - 152 223 IPR036893 GO:0003677|GO:0005634
Stsc30621g00003 545 SUPERFAMILY SBT domain 160 240 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30621g00003 Stsc-Chr30621 33652 36982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30621g00003 111 277 SBP-box Gene Family AT1G69170 53.892 2.28e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc30621g00003 SBP 5.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30621g00003 - - gmx:100777766 781.556