Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30621g00002 ATGGGAAGAGGGAAGGTTGTGCTAAAGAGGATAGAGAACAAGGTGAATAGGCAAGTGACATTTTCAAAGAGAAGAAATGGGCTTCTGAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAGGTTGCTCTCATGATCTTCTCTAACCGTGGCAAACTCTATGAGTTTTCAAGTTCCTCCAGCATGATGAAAATCATAGAGAAATACCATATGTATAACTATAGTTTGTCACATACTAGCCAAGCAACAAACGGTAACACTCAGAACACTTACGAGGACTATTTGAAGCTGAAAGCATATGTAGAACTCCTACAACGTTCACAAAGGAACCTTCTTGGAGAAGATCTAACCCAAACGACTTCAACGGAGCTTCAGCAGCTTGAGAATCAATTAGAGTCGGCATTGACTAATATTAGGTCAACCAAGACCCAGTTCATGCTTGATCGTCTTGCAGATCTTCAAAACCGGGAAAGAGCACTTGTTGATGTTAATACAGCTTTAAGAACTAAGTTGGAAGAAATTCAGAATTCAGAAATTCCTCTGAGGCTGAGGCTGGCTTGGGATGGTGAAGGGCCTAACAACCAATGCACTCATCTCTTTCCTCCTCATTCAGATTTTACTTTCCAAACTACTCTTGGGATGGTTAATCCCACTTTGCAGATTGGGTATAATAATCCCACTGGTGGTGATGAGGATGGAAATGTTGAAGCATGCGTCTCTGCTTGGATGCTATGA 738 0.416 MGRGKVVLKRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALMIFSNRGKLYEFSSSSSMMKIIEKYHMYNYSLSHTSQATNGNTQNTYEDYLKLKAYVELLQRSQRNLLGEDLTQTTSTELQQLENQLESALTNIRSTKTQFMLDRLADLQNRERALVDVNTALRTKLEEIQNSEIPLRLRLAWDGEGPNNQCTHLFPPHSDFTFQTTLGMVNPTLQIGYNNPTGGDEDGNVEACVSAWML 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30621g00002 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc30621g00002 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30621g00002 245 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Stsc30621g00002 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc30621g00002 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc30621g00002 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc30621g00002 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc30621g00002 245 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Stsc30621g00002 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc30621g00002 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Stsc30621g00002 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc30621g00002 245 Coils Coil 118 145 - -
Stsc30621g00002 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc30621g00002 245 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30621g00002 245 FunFam MADS-box transcription factor 1 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30621g00002 Stsc-Chr30621 9786 16258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30621g00002 1 175 MADS-box Gene Family AT5G15800 61.714 7.05e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc30621g00002 K-box 7.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30621g00002 K09264 - gmx:100797819 273.478