Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30621g00001 ATGGGGCGAGGGAGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAACCGCCAAGTCACTTTCTCAAAGAGAAGAGCTGGTTTGCTTAAGAAGGCTAATGAGATCTCCGTTCTCTGCGATGCCGAAGTTGCTCTCATCGTCTTCTCTACCAAAGGAAAACTCTTTCAATTCTCCAGCGATCCCTGTATGGAGAGAATAATCGAACGGTATGAAAGGTATTCATATGCGGAGAGACAGCATCAGCTTGTGGCAAATGCTCAAGGATCAGAAACAAATTGGACTTTAGAACATGCAAAGCTCAAAGCAAGGGTGGAAGTGTTACAAAGGAATCAAAGGAATTTTTTGGGCGAAGATCTTCACGGCCTAAGTATGAAAGAGCTTCAAAATTTAGAACATCAACTTGATTCTGCTCTCAAGCAAATTAGATCACGAAAGAATCAAATCATGTATGAGAATATCTCACTGCTTCAGAAAAAGGAGAAAGCTCTAAATGAACAAAACAATTCACTAGCTAAGAAGATCAAGGGGAAGGAAAAAGAAGTCACAGAACAAACTCATCAATTGGAGCTGCAAGATAATTATATGGATCTACCCCCTTCAATTGTTGCACCTCCTCAACCCTCAGAAAACTTGAATATTAGAGGAATAATGCTACAAGGTAGAAGTGATGGAGAACATAATAATGATAATGAAGATTTCCAAACTAATGTTAGGGCTCATAATAATATGCTTCTCCCCAATTGGATGCTTCCTCCTACAAATGAATTAAATTGA 774 0.3941 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIVFSTKGKLFQFSSDPCMERIIERYERYSYAERQHQLVANAQGSETNWTLEHAKLKARVEVLQRNQRNFLGEDLHGLSMKELQNLEHQLDSALKQIRSRKNQIMYENISLLQKKEKALNEQNNSLAKKIKGKEKEVTEQTHQLELQDNYMDLPPSIVAPPQPSENLNIRGIMLQGRSDGEHNNDNEDFQTNVRAHNNMLLPNWMLPPTNELN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30621g00001 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc30621g00001 257 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc30621g00001 257 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Stsc30621g00001 257 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Stsc30621g00001 257 Pfam K-box region 89 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30621g00001 257 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Stsc30621g00001 257 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30621g00001 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc30621g00001 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc30621g00001 257 Coils Coil 124 147 - -
Stsc30621g00001 257 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Stsc30621g00001 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Stsc30621g00001 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc30621g00001 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc30621g00001 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc30621g00001 257 Coils Coil 153 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30621g00001 Stsc-Chr30621 728 5087 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30621g00001 1 219 MADS-box Gene Family AT1G26310 58.182 1.52e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc30621g00001 K-box 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30621g00001 K09264 - gmx:100816836 324.709