Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30619g00001 ATGCAGGGGACTCCAGTGAATATCATTGCGGGGTCTCACGTCTGGGTTGAAGATCCAGACGAAGCTTGGCTCGATGGACAGGTTTCTAAAATCACTGGCAATGATGTCGAAGTCACCACAACCAATGGAAAGCAGATTACTTCAAAGTTATCAAAGATATATCCCAAGGATATGGAAGCTCCTGCTGGCGGAGTCGATGATATGACTAAGCTCTCCTATTTGCATGAGCCTGGAGTCTTGCAGAACTTGAAAAGCAGATATGAATTGAATGAAATATATACATACACTGGAAACATTTTGATTGCGATAAATCCATTCCAGAGGCTACCTCACATTTATGATGCACATATGATGCAACAGTACAAGGGGGCACCGTTTGGTGAATTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCTTACAGGGCTATGATTAACGAAGGAAAAAGCAATTCAATTCTCGTCAGTGGAGAAAGTGGAGCTGGTAAAACTGAAACAACCAAAATGCTTATGCGATACCTTGCTTACTTAGGAGGAAGGGCTGCCACTGAAGGAAGAACAGTTGAACAGCAAGTTCTTGAATCAAATCCAGTTTTAGAAGCCTTTGGCAATGCTAAGACTGTGAGGAACAACAATTCCAGTCGTTTTGGTAAATTCGTTGAGATCCAATTCGATAAGAATGGAAGAATCTCAGGAGCAGCCATTAGAACATACCTTCTAGAAAGATCTAGGGTTTGTCAAGTGAATGATCCTGAACGCAACTACCATTGTTTCTACCTTCTCTGTGCTGCTCCACAGGAGGAAGTTGAGAAATACAAATTAGGACATCCAAAAACATTTCATTACCTTAATCAGTCAAAATGTTATGAACTGGCCGATGTAAGCGATGCTCGCGAGTATCTTGCCACTAGAAGAGCTATGGACATTGTTGGAATAAGCCAAAAGGATCAGGAAGCAATTTTCAGAGTAGTTGCTGCCATTCTTCATCTTGGTAATATAGATTTTACCAAAGGAAAGGATGCTGATTCATCAGTTCCAAAAGATGATAAATCCAAATTCCACATGAAAATGACTGCTGAGCTTCTCATGTATGATTGA 1098 0.4098 MQGTPVNIIAGSHVWVEDPDEAWLDGQVSKITGNDVEVTTTNGKQITSKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKSRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEVEKYKLGHPKTFHYLNQSKCYELADVSDAREYLATRRAMDIVGISQKDQEAIFRVVAAILHLGNIDFTKGKDADSSVPKDDKSKFHMKMTAELLMYD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30619g00001 365 Gene3D Myosin VI head, motor domain, U50 subdomain 311 365 - -
Stsc30619g00001 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 351 IPR027417 -
Stsc30619g00001 365 SMART MYSc_2a 58 365 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30619g00001 365 Gene3D Kinesin motor domain 60 297 IPR036961 -
Stsc30619g00001 365 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 9 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc30619g00001 365 ProSiteProfiles Myosin motor domain profile. 63 365 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30619g00001 365 PANTHER MYOSIN 55 365 - -
Stsc30619g00001 365 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30619g00001 365 PRINTS Myosin heavy chain signature 150 175 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30619g00001 365 PRINTS Myosin heavy chain signature 93 112 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30619g00001 365 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc30619g00001 365 Pfam Myosin head (motor domain) 65 362 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30619g00001 365 Gene3D - 12 56 IPR008989 GO:0003774|GO:0005524|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30619g00001 Stsc-Chr30619 3020 4666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30619g00001 3 365 Myosins gene family AT1G54560 89.256 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30619g00001 K10357 - csv:101206606 676.396