Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30617g00006 ATGGAGAGGATCATCGGAGGGAAGTACAAAATTGGTCAGAAAATTGGAAGTGGCTCATTTGGTGAAATTCATATAGGGTCACATATTGAGAATGCTGAACTTGTGGTAATTAAGATGGAGAATAGGAAAACCAAACAACCACAGCTACTTTATGAAGCCGAGTTATATAATCTTTTAAAAGGAGGAAGTGGAATTCCAAGAATGAAATGGAGTGGCATAGATAAAGACAACAATTTTCTAGTTCTTGACCTTTTAGGACCAAGTCTTGAAGACCTTTTTCACTATTGTGGGAAGAAATTTTCATTAAAAACCGTTTTGATGTTGGCTGATCAAATGCTTACAAGAATAGAGTATTTGCATTCCAAGGGCTTTCTGCATAGAGACATTAAGCCAGATAACTTCCTTATGGGTCTTGGCAGAAAAGCAAAGCAGGTTTATATGATTGATTTTGGACTTACAAAGAGATACAGAGACCCTATCACAAATAACCATATTCCTTGTAGGGAAAACAAACTTTTAATAGGGACTCCACGTTATGCTAGCCGCAATGCTCACTTGGGATTTGAACAAAGTCGCCGGGATGATTTGGAGTCTCTTGGTTATGTTCTTGTGTACTTTATAAGAGGAAGCCTTCCTTGGCAAGGTCTGCAAGCTCCCACCAATAAACAAAAATACAACAAAATTTCTGAAATGAAGCGATCAATTCCGATTGATATACTTTGCAAGTCATGTCCTGAGCAGTTTGCATCATACTTTCGGTATTGCCATTCTTTGACATTTGATCAGCCACCAGATTATGGATTCTTGAAGCACATCTTTCGTGATTTATTCACTACTCAAGAAAATGCAACAAAAAAAGACGTCAATTCAATCAAATCCCCCAATAATCGCTATTCCAAGCAGTCCAGAACGAAAGGATGTTGA 924 0.3777 MERIIGGKYKIGQKIGSGSFGEIHIGSHIENAELVVIKMENRKTKQPQLLYEAELYNLLKGGSGIPRMKWSGIDKDNNFLVLDLLGPSLEDLFHYCGKKFSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGRKAKQVYMIDFGLTKRYRDPITNNHIPCRENKLLIGTPRYASRNAHLGFEQSRRDDLESLGYVLVYFIRGSLPWQGLQAPTNKQKYNKISEMKRSIPIDILCKSCPEQFASYFRYCHSLTFDQPPDYGFLKHIFRDLFTTQENATKKDVNSIKSPNNRYSKQSRTKGC 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30617g00006 307 CDD STKc_CK1 8 273 - -
Stsc30617g00006 307 SUPERFAMILY Protein kinase-like (PK-like) 4 281 IPR011009 -
Stsc30617g00006 307 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc30617g00006 307 MobiDBLite consensus disorder prediction 286 307 - -
Stsc30617g00006 307 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Stsc30617g00006 307 Pfam Protein kinase domain 9 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30617g00006 307 PANTHER CASEIN KINASE-RELATED 8 287 - -
Stsc30617g00006 307 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30617g00006 307 FunFam CK1 family protein kinase 1 306 - -
Stsc30617g00006 307 ProSiteProfiles Protein kinase domain profile. 9 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30617g00006 307 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30617g00006 Stsc-Chr30617 21270 31970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30617g00006 8 213 MAP Kinase Kinase Kinase AT3G06030 26.852 8.44e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc30617g00006 Pkinase 8.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30617g00006 K08960 - vvi:100247344 449.129