Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30617g00005 ATGGAGAGGATCATCGGAGGGAAGTACAAAATTGGTCAGAAAATTGGAAGTGGCTCATTTGGTGAAATTCATATAGGGTCACATATTGAGAATGCTGAACTTGTGGTAATTAAGATGGAGAATAGGAAAACCAAACAACCACAGCTACTTTATGAAGCCGAGTTATATAATCTTTTAAAAGGAGGAAGTGGAATTCCAAGAATGAAATGGAGTGGCATAGATAAAGACAACAATTTTCTAGTTCTTGACCTTTTAGGACCAAGTCTTGAAGACCTTTTTCACTATTGTGGGAAGAAATTTTCATTAAAAACCGTTTTGATGTTGGCTGATCAAATGCTTACAAGAATAGAGTATTTGCATTCCAAGGGCTTTCTGCATAGAGACATTAAGCCAGATAACTTCCTTATGGGTCTTGGCAGAAAAGCAAAGCAGGTTTATATGATTGATTTTGGACTTACAAAGAGATACAGAGACCCTATCACAAATAACCATATTCCTTGTAGGGAAAACAAACTTTTAATAGGGACTCCACGTTATGCTAGCCGCAATGCTCACTTGGGATTTGAACAAAGTCGCCGGGATGATTTGGAGTCTCTTGGTTATGTTCTTGTGTACTTTATAAGAGGAAGCCTTCCTTGGCAAGGTCTGCAAGCTCCCACCAATAAACAAAAATACAACAAAATTTCTGAAATGAAGCGATCAATTCCGATTGATATACTTTGCAAGTCATGTCCTGAGCAGTTTGCATCATACTTTCGGTATTGCCATTCTTTGACATTTGATCAGCCACCAGATTATGGATTCTTGAAGCACATCTTTCGTGATTTATTCACTACTCAAGGATACGATGATTCTGATAATTGTTTATTTGACTGGACCATTCTAAAATTTCAGAAAATGCAACAAAAAAAGACGTCAATTCAATCAAATCCCCCAATAATCGCTATTCCAAGCAGTCCAGAACGAAAGGATGTTGACAACAATCAACAAGGAGTTGGTGATGTTACTCAAGATATTGTGGCAAAACCATCAGCTATTATTGATCATCCTCGTGTCACCATAAACAACAAGAAATCCAATCTTCAGAAATTTAACCACAATGTTCCAACCCAAGAACAGACAGAGAAGAATGTTTTATGTATTTCGAGTGGTATGCCAAGAGTCTCTACACAAAATGTCTCAAAAATGAAAAGCTCAGGAGGAACCTCAAATCAGGTTTGTGGACCTGCAAGTAACAATAATTATGTTACTCCAAGAACTTTTGTACCTATACTTCGTAGAACTTCTTCAACAAAACAGTAG 1302 0.3717 MERIIGGKYKIGQKIGSGSFGEIHIGSHIENAELVVIKMENRKTKQPQLLYEAELYNLLKGGSGIPRMKWSGIDKDNNFLVLDLLGPSLEDLFHYCGKKFSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGRKAKQVYMIDFGLTKRYRDPITNNHIPCRENKLLIGTPRYASRNAHLGFEQSRRDDLESLGYVLVYFIRGSLPWQGLQAPTNKQKYNKISEMKRSIPIDILCKSCPEQFASYFRYCHSLTFDQPPDYGFLKHIFRDLFTTQGYDDSDNCLFDWTILKFQKMQQKKTSIQSNPPIIAIPSSPERKDVDNNQQGVGDVTQDIVAKPSAIIDHPRVTINNKKSNLQKFNHNVPTQEQTEKNVLCISSGMPRVSTQNVSKMKSSGGTSNQVCGPASNNNYVTPRTFVPILRRTSSTKQ 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30617g00005 433 Gene3D Transferase(Phosphotransferase) domain 1 1 339 - -
Stsc30617g00005 433 Pfam Protein kinase domain 9 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30617g00005 433 CDD STKc_CK1 8 273 - -
Stsc30617g00005 433 PANTHER CASEIN KINASE-RELATED 8 342 - -
Stsc30617g00005 433 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc30617g00005 433 FunFam CK1 family protein kinase 1 330 - -
Stsc30617g00005 433 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30617g00005 433 SUPERFAMILY Protein kinase-like (PK-like) 4 292 IPR011009 -
Stsc30617g00005 433 ProSiteProfiles Protein kinase domain profile. 9 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30617g00005 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30617g00005 Stsc-Chr30617 21270 31970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30617g00005 8 213 MAP Kinase Kinase Kinase AT3G06030 26.852 1.42e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc30617g00005 Pkinase 2.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30617g00005 K08960 K08959 gmx:100782913 534.643