Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc30616g00004 | ATGCCTTTGCGCTCTGATGGCTCTCTGTGTGTTGCTGACTCCACCTTCACCCACTCTGAATGGAGATATGAGAATGGAATAGGCGGTGGAAGTTCATCAAATGAAGAAGGTCCAAAGCTTGAAGACTTCTTAGGATGCTACTCATCATCAAATCCTGAAACCAAAGCATTTTCTCAGCAAAACAATTTCTCAAAGATTAATATGAATGTTGCCCCATCAGGATATGTTACTACCAACAACAACACTACAGAGACTGAAACATCATCGTCACTGTTCCATACATTCAATCATCATCATCATCATCATCATGCCCTCATACCGGGGAATGGGGTTTACAAGACATCATGGCTGGCACAAACTTGTTGCTCCTCTTCATCTTCAGCAGAGGCAAATCAAAATCAAAATAGTAGTAGTAACAATAATAATAATGGTGGGTGCAATTTCCAAACTCTGTCACTGACAATGAGTCCAAGCAATGTTCAACAACAACAAAATGGTGGGATGGTGATGGTGGTGGGGGGTGGAATAAACAACCAGCAAGTCCTTCATCATAATCAGGTTGATGATGAGAGTCGTAAAAGATCCATTGTTAAATCTCAAGGGAGAGAACCTGTGCCTCGTAAATCTATTGACACTTTTGGTCAAAGAACTTCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGTAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAGGAAGGACAAACAAGAAAAGGAAGGCAAGGTGGTTATGACAAAGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCTCTCAAGTATTGGGGTCCAATTACTCACATCAATTTCCCCTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGAACAGACAAGAATTTGTCGCCAATTTGAGAAGGAAGAGCAGTGGATTTTCAAGAGGAGCATCTGTGTATAGAGGTGTGACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGTATAGGAAGGGTTGCAGGCAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCGGAAGCATATGATATTGCAGCAATCAAGTTCAGGGGAACAAGTGCCGTGACCAATTTTGACATAAGCAGGTATGATGTGAAGAGAATTTGCTCAAGCTCAACGCTCATTGCCGGAGACCTTGCGAAAAGGTCACCTAAAGACTCGGCTCTGGCCATCGCCGACGACTTCAACTCAAGTGGTTCTGCCACACCTTCTCAACCAACTCCTTTGGCAATAACCGATGGCGAACACTCTGATGAGTTGTCCAACATGGTGTGGAATGCCGACGGTGACGAGCAACAGCAGAACGAGACCAGAACCATCAACAACAATGTTGCCGGTCCATTGTCGTCGCAGCAGGTTTCGCGGAGCAACAAGAATGCGCCTCAAAGCCCGAATGAATTCGGGGTGAATGGAACAGATTATGGACATGGATATTTCAGCCTGGAGGCACCACCAAAATATGATGATGGAAACAATGAACATGAAAACAGGATTGGGAGTTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATAA | 1599 | 0.4371 | MPLRSDGSLCVADSTFTHSEWRYENGIGGGSSSNEEGPKLEDFLGCYSSSNPETKAFSQQNNFSKINMNVAPSGYVTTNNNTTETETSSSLFHTFNHHHHHHHALIPGNGVYKTSWLAQTCCSSSSSAEANQNQNSSSNNNNNGGCNFQTLSLTMSPSNVQQQQNGGMVMVVGGGINNQQVLHHNQVDDESRKRSIVKSQGREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPITHINFPLSTYEKELEEMKHMNRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDSALAIADDFNSSGSATPSQPTPLAITDGEHSDELSNMVWNADGDEQQQNETRTINNNVAGPLSSQQVSRSNKNAPQSPNEFGVNGTDYGHGYFSLEAPPKYDDGNNEHENRIGSLGLVNQVPMFALWNE | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc30616g00004 | 532 | SUPERFAMILY | DNA-binding domain | 317 | 378 | IPR016177 | GO:0003677 | |
| Stsc30616g00004 | 532 | MobiDBLite | consensus disorder prediction | 186 | 205 | - | - | |
| Stsc30616g00004 | 532 | Pfam | AP2 domain | 317 | 368 | IPR001471 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | Pfam | AP2 domain | 219 | 274 | IPR001471 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | Gene3D | AP2/ERF domain | 318 | 378 | IPR036955 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | Gene3D | AP2/ERF domain | 218 | 284 | IPR036955 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 33 | 459 | - | - | |
| Stsc30616g00004 | 532 | PRINTS | Ethylene responsive element binding protein signature | 358 | 378 | IPR001471 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | PRINTS | Ethylene responsive element binding protein signature | 220 | 231 | IPR001471 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | FunFam | AP2-like ethylene-responsive transcription factor | 317 | 378 | - | - | |
| Stsc30616g00004 | 532 | CDD | AP2 | 317 | 378 | IPR001471 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | CDD | AP2 | 218 | 284 | IPR001471 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | SMART | rav1_2 | 318 | 382 | IPR001471 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | SMART | rav1_2 | 219 | 288 | IPR001471 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | MobiDBLite | consensus disorder prediction | 411 | 431 | - | - | |
| Stsc30616g00004 | 532 | ProSiteProfiles | AP2/ERF domain profile. | 219 | 282 | IPR001471 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | MobiDBLite | consensus disorder prediction | 459 | 483 | - | - | |
| Stsc30616g00004 | 532 | SUPERFAMILY | DNA-binding domain | 218 | 284 | IPR016177 | GO:0003677 | |
| Stsc30616g00004 | 532 | ProSiteProfiles | AP2/ERF domain profile. | 318 | 376 | IPR001471 | GO:0003700|GO:0006355 | |
| Stsc30616g00004 | 532 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 218 | 284 | - | - | |
| Stsc30616g00004 | 532 | MobiDBLite | consensus disorder prediction | 411 | 428 | - | - | |
| Stsc30616g00004 | 532 | MobiDBLite | consensus disorder prediction | 186 | 209 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc30616g00004 | Stsc-Chr30616 | 22390 | 26594 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc30616g00004 | 189 | 404 | AP2-EREBP Transcription Factor Family | AT1G72570 | 83.562 | 2.81e-132 | 389 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | AP2/ERF-AP2 | Stsc30616g00004 | AP2 | 1.1e-09 | CL0081 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc30616g00004 | K09285 | - | gmx:100809762 | 687.567 |