Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30615g00003 ATGGGTAATGAGTTCCCTACTTTGCAGCATGTATATGACCAGCTACACATTTTGGAGCTTGCAGATATTCTTATTGAGAGACCATCACAGTACGCGAGGAGAGTTGAAGAAATTTCAACTGTATTCAAAAACTTACATCACCTTTTAAATTCCTTGCGGCCTCATCAGGCAAGAGCAACATTAATTCACATTTTGGAACTTCAGATTGAGCGCCGTAAACAAGCAGTGGAGGACATAAAGAGGAGAAGAGAAGAGGCACGAAGACTACTTAACGAGTCCCTGGCAACACTTGATGGCCAATAG 303 0.4224 MGNEFPTLQHVYDQLHILELADILIERPSQYARRVEEISTVFKNLHHLLNSLRPHQARATLIHILELQIERRKQAVEDIKRRREEARRLLNESLATLDGQ 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30615g00003 100 SUPERFAMILY Mediator hinge subcomplex-like 14 91 IPR037212 GO:0016592
Stsc30615g00003 100 Gene3D - 6 91 IPR044888 -
Stsc30615g00003 100 Coils Coil 62 96 - -
Stsc30615g00003 100 Pfam MED7 protein 15 90 IPR009244 GO:0003712|GO:0006357|GO:0016592
Stsc30615g00003 100 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 14 100 IPR009244 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30615g00003 Stsc-Chr30615 38334 40318 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Stsc30615g00003 Med7 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30615g00003 K15148 - gmx:100792250 158.688