Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30614g00002 ATGGGTTGTGAGATGGAATTGGAGAGTGAGTGTATTGAGGACATGGAAGTTGAAGTCCTACCTTCAATGTGGCCGGAAGATATCGGAACAGACGCCGGAAAACAGTTCAATATAGAGAAGCCTGGAGGGGATCAAGACATGTTGGAAGAAGTTACAATCATGGAGGAACCAACCATAGCCGATTTCCAGCGCTTAATGGAGCTAACTAACTACACGGACAAAGGCTCATCGCAATTGGCCTACTTGATGAAACACTGGGAGTATAAGCAGGCGAATGCGGTTCGCCTTCTGAGAGAAGAGCTTGACATCTTGAGCAGGCAGAGGGAGGAAGTTGAGCAAAGGAGGCTGGAGTTATTGCAAGAGAATCGGTTCGAGGAAGACTATGGAGGCGATAAGAGGCCGTTGGAGGCGAGTGTGCAGCGCGAGCAGACTCTTATGGATAAGTTGCAAGAAAGTATTGAGACTATTGAGAGGCAGAGCTCGCCGGTCGAAGAGTTGTCGCAGATTCTGAAGAGAGCTGATAATTTCTTGCATTTTATACTGCAAAATGCACCTGTTGTCATTGGTCATCAGGACAAAGAGTTGCGTTATCGATTTATCTATAATCACTATCCAAGATTACAAGAGGAGGACATCATAGGCAAAACAGATGTTGAAATCTTCACAGGTTCTGGTGTGAAAGAATCTCAAGATTTTAAGAGAGAAGTTATGGAGAAAGGATTGCCTGCAAAAAAGGAAATCACGTTCGAGACGGATCTATTTGGGTCGAAGACATTCTTGATATATGTAGAGCCTGTGTTTAGCAAGGCAGGTGAAACAATAGGAATAAATTACATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGCTTCGCGAAGAGATCGCGGTTCAGAAAGCAAAGGAGACTGAACTGAATAAAACCATTCATATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCACCATTGTCTGGGGTTGTGAGCATGGCTGAAATTCTTTCTACGACGAAACTTGATCGCGAGCAGAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTCATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGCGATGAAGTTGGAGGCCACGAAATTCCGGCCGAGAGAGGTAGTAAAGCATGTACTTCAGACAGCAGCAGCATCATTGCAGAAAATGCTAACCTTAGAAGGGAATGTGGCAGATGATATACCTGTTGAGGTCATTGGAGATGTGTTAAGAATTCGTCAGATTCTCACAAATTTAGTCAGCAATGCTGTGAAGTTTACACATGAAGGAAAAGTTGGAATAAACCTTTATGTTGTGGCAGAGCCACCTTTTGCCAAAACAGAAGAATGCAATAATAATCAAAAGATAAACTCATCAGAACAATCAACAATTTGTTCAAATGGAGTGAAGGATCATAGATATCCATCAACACCATCAAAGAGTGGCAGTGATCAAAATCATCATGGTGGTCAAAACCACAATGAACATAATGCCCAGAATCACGGGTTTAACAACGAATTTCGATCTTCGGTTAAGAGTGATTACTCAATGAATGGTGACACTGAGGAGGAAAATCACTCAACTGAAACAACAGTGTGGATACGTTGTGATGTGTATGACACTGGAATTGGAATACCAGAAAAGGCTATACCCACTTTATTCAAAAGATACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGAGGCACAGGACTGGGATTAGCAATATGCAAACAACTGGTTGAGTTAATGGGAGGACGCTTAACAGTGTCAAGCAAAGAACACGTTGGTTCTACCTTCACATTCATACTTCCCTACAAAGTTTCAATACCTTCTTCTGATGAAAACTCCGACGACACCGATGAACTCTCCGATGTGGACAACAACGATGCCGTTTCCGACGATTTAACAGAAGGCTTCTTCCAATTCCAACCCCGCACTTTGGGATCTCTCTTCTCTTCCAACGGATCCACAAGACGAACCTCGCACAAGTTCAACGGCTTTCCTTCCAATCCCTTCGCATTGCCTTCTCCAAACGGCCTCGTTTCGAAAGCAGTAACGAATTCCGTTGAAGATTCGTCTTCGGTTGTTGCTGATGCTTCAGATTTGACGGAATCAACGAGTTCATCAAGCACCGAGAAAGATCGTCATCAGAATTCAGAGAGTGGAGTCAAATCGCGGCACGAGCCTTCGTTTTGTGATGATTCTTCGAAGGAAGTGAATAATGAATTGAGAAACTCATCGAATAAGTGTGAAGATTTGATTATGAAGAAGGAAGATGCGAATTCGCGATGCGTTAGTAGGTGCAGTGGATCGAGGGAAGAAGATAGCAAAGAGTGTTGTAGATTGAAGCCGAAGATACTTCTTGTTGAAGATAACAAGATCAATGTGATGGTGACGCAGTCAATGATGAAGAGGTTAGGGTATAGCATGGATGTTGTTAACAATGGAGTCGAAGCTGTTAAAGCGGTTCAGCGTCACACTTATGACATCATTCTCATGGACGTTTTCATGCCAGTTATGAACGGTCTTCAGACGACGAAACTGATTCGATCTTACGAGGAAACCGGAAACTGGGATGCTGCAAAAGATTCTGGAATTGAACAAATACAACAAATTTCAGATTATGAAGGTTGTGTACCACCAAGAAAGCGGATCCACATTATCGCGATGACAGCAAACACAGTAACAGAGAGTGCAGAGGAATGTTATGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGAATGTCTTGAACAATACCTAAGGTGA 2874 0.4269 MGCEMELESECIEDMEVEVLPSMWPEDIGTDAGKQFNIEKPGGDQDMLEEVTIMEEPTIADFQRLMELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDILSRQREEVEQRRLELLQENRFEEDYGGDKRPLEASVQREQTLMDKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHYPRLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETDLFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPVEVIGDVLRIRQILTNLVSNAVKFTHEGKVGINLYVVAEPPFAKTEECNNNQKINSSEQSTICSNGVKDHRYPSTPSKSGSDQNHHGGQNHNEHNAQNHGFNNEFRSSVKSDYSMNGDTEEENHSTETTVWIRCDVYDTGIGIPEKAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHVGSTFTFILPYKVSIPSSDENSDDTDELSDVDNNDAVSDDLTEGFFQFQPRTLGSLFSSNGSTRRTSHKFNGFPSNPFALPSPNGLVSKAVTNSVEDSSSVVADASDLTESTSSSSTEKDRHQNSESGVKSRHEPSFCDDSSKEVNNELRNSSNKCEDLIMKKEDANSRCVSRCSGSREEDSKECCRLKPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEAVKAVQRHTYDIILMDVFMPVMNGLQTTKLIRSYEETGNWDAAKDSGIEQIQQISDYEGCVPPRKRIHIIAMTANTVTESAEECYANGMDSFVSKPVTFQKLKECLEQYLR 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30614g00002 957 Gene3D - 808 957 - -
Stsc30614g00002 957 SMART HKATPase_4 433 635 IPR003594 -
Stsc30614g00002 957 Pfam Response regulator receiver domain 814 882 IPR001789 GO:0000160
Stsc30614g00002 957 CDD HisKA 321 383 IPR003661 GO:0000155|GO:0007165
Stsc30614g00002 957 FunFam Probable histidine kinase 1 523 638 - -
Stsc30614g00002 957 FunFam Histidine kinase 5 806 957 - -
Stsc30614g00002 957 MobiDBLite consensus disorder prediction 736 768 - -
Stsc30614g00002 957 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 321 387 IPR036097 GO:0000155|GO:0007165
Stsc30614g00002 957 ProSiteProfiles Histidine kinase domain profile. 329 635 IPR005467 -
Stsc30614g00002 957 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 433 633 IPR003594 -
Stsc30614g00002 957 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 103 956 - -
Stsc30614g00002 957 Coils Coil 94 121 - -
Stsc30614g00002 957 CDD REC_hyHK_CKI1_RcsC-like 814 952 - -
Stsc30614g00002 957 SMART REC_2 812 952 IPR001789 GO:0000160
Stsc30614g00002 957 Coils Coil 293 313 - -
Stsc30614g00002 957 Pfam His Kinase A (phospho-acceptor) domain 324 387 IPR003661 GO:0000155|GO:0007165
Stsc30614g00002 957 Coils Coil 764 791 - -
Stsc30614g00002 957 MobiDBLite consensus disorder prediction 484 552 - -
Stsc30614g00002 957 Gene3D PAS domain 163 299 - -
Stsc30614g00002 957 MobiDBLite consensus disorder prediction 484 542 - -
Stsc30614g00002 957 ProSiteProfiles Response regulatory domain profile. 813 956 IPR001789 GO:0000160
Stsc30614g00002 957 CDD HATPase_EvgS-ArcB-TorS-like 438 632 - -
Stsc30614g00002 957 MobiDBLite consensus disorder prediction 720 735 - -
Stsc30614g00002 957 Gene3D - 310 387 - -
Stsc30614g00002 957 Coils Coil 139 159 - -
Stsc30614g00002 957 PRINTS Bacterial sensor protein C-terminal signature 560 574 IPR004358 GO:0016310|GO:0016772
Stsc30614g00002 957 PRINTS Bacterial sensor protein C-terminal signature 595 613 IPR004358 GO:0016310|GO:0016772
Stsc30614g00002 957 PRINTS Bacterial sensor protein C-terminal signature 619 632 IPR004358 GO:0016310|GO:0016772
Stsc30614g00002 957 SMART HisKA_10 322 387 IPR003661 GO:0000155|GO:0007165
Stsc30614g00002 957 FunFam Putative histidine kinase 5 310 387 - -
Stsc30614g00002 957 Gene3D - 388 637 IPR036890 -
Stsc30614g00002 957 SUPERFAMILY CheY-like 812 957 IPR011006 -
Stsc30614g00002 957 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 409 632 IPR036890 -
Stsc30614g00002 957 MobiDBLite consensus disorder prediction 720 773 - -
Stsc30614g00002 957 FunFam Histidine kinase 5 164 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30614g00002 Stsc-Chr30614 15357 21464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30614g00002 540 956 Histidine Kinase Gene Family AT5G10720 49.552 2.20e-124 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc30614g00002 HATPase_c 1.5e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30614g00002 - - gmx:100796072 1357.04