Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30613g00008 ATGTCGAACCGTCGTTCATCGTTCTCTTCCTCAACGACGTCGTCTTTGGCAAAACGCCATGCATCGTCATCGGCGGCTTCTTCAACCGAAAACCACAACGCGGGAAAGGTGGCTTCCCTTGCCAAGAAGCGAGCGCCTCTAACAAACCTCACCAATCACATTCCTCGACGCTCTTCTCTGGTTCCTTGTGCTGCTAAAGTTGCTAAGACCAAGAAAGACGCTTCATCATGCAGCACTACTACGATTAGTTCTTCAATTTCGAACAAGGTACCGGTTTTGCAGAGTGTTGTGAAGGCCAATGCGGTTGTTCTTCCTAAGCCTGGTTATGTCTCTGGAAGGGAAGAAGATGATGCTAAGAAAATTGTTGTTGCTGCTCATGTATCAAAAATGGATGTGTCTCCTTGTAAATCAGATGGGGCATCTGTTTCCATGTCTGTGGATGAGACAATGTCTTCTTGTGATTCTTTCAAGAGCCCTGTCATTGAGTATTTGGACAACAATGATATCTCGCCCGCAGTCGAATCGATCGAGAGGAAGACGTTCAGCACCCTCAACATTTCTGATACTCCAGAGCCACCAGCAGGGAACATATGTAGTAGGGACATACTTGTTGGGTTGGAGAAAGAGGATAAAGTTGTGAATGTTGATAACAACTTCATGGATCCTCAGCTTTGTGCAACATTTGCTTGTGATATATACATGCACCTCCGTGCATCTGAGGCTAAGAAAAGACCTTCCACGGACTTCATGGAGAGTGTTCAGAAGGACATAAATCCCAGCATGCGTGCTATATTGATAGATTGGCTTGTGGAGGTAGCCGAAGAGTATCGATTGGTACCTGATACGTTGTATTTGACAGTGAACTACATAGATAGGTATCTTTCAGGGAATCCAATGAACAGGCAAAAATTACAATTACTGGGTGTTGCTTCCATGATGGTTGCCTCTAAATATGAGGAGATTTGTGCACCCCAGGTGGAGGAATTTTGTTACATTACCGACAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCTGCTGTCTTGAATTATCTGAAGTTTGAAATGACGGCTCCAACAATCAAGTGTTTCTTGAGACGGTTCGTTCGTGCAGCTCAAGGAGTCAGTGAGACCCCTTCGTTGCAACTAGAGTGCTTGACAAACTACATTGCCGAATTGTCTTTGTTGGAGTACAGTATGCTTTGTCATGCTCCGTCACTAATAGCTGCATCTGCAATTTTTCTGGCCAAATTTATACTCTCCCCCTCAACCAAACCATGGAATGCCACATTGAAGCACTATACACAATACCAGCCTTCTGATTTGTGTAGTTGTGTAAGGGATCTCCATAGGCTTTGTTGCAACAATACTAATTCCAATTTGCCTGCAATTAGGGAAAAGTATAGTCAGCACAAGTACAAAAGTGTGGCCAAGAAATATTGCCCTCCCTCAATACCTTCAGAATATTTTCAGAATTGA 1482 0.4372 MSNRRSSFSSSTTSSLAKRHASSSAASSTENHNAGKVASLAKKRAPLTNLTNHIPRRSSLVPCAAKVAKTKKDASSCSTTTISSSISNKVPVLQSVVKANAVVLPKPGYVSGREEDDAKKIVVAAHVSKMDVSPCKSDGASVSMSVDETMSSCDSFKSPVIEYLDNNDISPAVESIERKTFSTLNISDTPEPPAGNICSRDILVGLEKEDKVVNVDNNFMDPQLCATFACDIYMHLRASEAKKRPSTDFMESVQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQKLQLLGVASMMVASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNYLKFEMTAPTIKCFLRRFVRAAQGVSETPSLQLECLTNYIAELSLLEYSMLCHAPSLIAASAIFLAKFILSPSTKPWNATLKHYTQYQPSDLCSCVRDLHRLCCNNTNSNLPAIREKYSQHKYKSVAKKYCPPSIPSEYFQN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30613g00008 493 CDD CYCLIN_AtCycA-like_rpt2 360 474 - -
Stsc30613g00008 493 SUPERFAMILY Cyclin-like 221 357 IPR036915 -
Stsc30613g00008 493 Pfam Cyclin, C-terminal domain 360 479 IPR004367 -
Stsc30613g00008 493 ProSitePatterns Cyclins signature. 262 293 IPR006671 -
Stsc30613g00008 493 Gene3D - 231 479 - -
Stsc30613g00008 493 Gene3D - 245 358 - -
Stsc30613g00008 493 SMART Cyclin_C_2 360 483 IPR004367 -
Stsc30613g00008 493 Pfam Cyclin, N-terminal domain 231 357 IPR006671 -
Stsc30613g00008 493 MobiDBLite consensus disorder prediction 1 53 - -
Stsc30613g00008 493 FunFam Cyclin A1 347 479 - -
Stsc30613g00008 493 SMART cyclin_7 364 452 IPR013763 -
Stsc30613g00008 493 SMART cyclin_7 267 351 IPR013763 -
Stsc30613g00008 493 FunFam Mitotic cyclin 6 245 345 - -
Stsc30613g00008 493 PANTHER CYCLINS 171 475 IPR039361 -
Stsc30613g00008 493 PIRSF Cyclin_A_B_D_E 1 491 IPR046965 GO:0016538|GO:0044772
Stsc30613g00008 493 SUPERFAMILY Cyclin-like 360 485 IPR036915 -
Stsc30613g00008 493 MobiDBLite consensus disorder prediction 1 35 - -
Stsc30613g00008 493 CDD CYCLIN_AtCycA_like_rpt1 221 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30613g00008 Stsc-Chr30613 34697 38237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30613g00008 1 493 Core Cell Cycle Gene Families AT1G44110 61.122 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30613g00008 K06627 - gmx:100789565 675.241