Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30613g00006 ATGAGCTTCTTGAGGCCGTGTGCAATGTACAACTTCTTTGTGGCTTCTCCATCAATGCGATGGATGCCATGTCAGAGTGGAGGCTTCGTCTTCCGATGGCCTGGTCTTGATGGCTTCATGAGGCTCCTCCTTCTTGCTCTTCTCTGGACCATGCTTTCTGAGATTCACTACATACCCTCTTCTTCTATGTACCCAACCCTTCGTGTTGGCGATCGAATTCTCGTCGAAAAGGCTTCATTTTACATCAGGAGTCCTGCTGTAAATGATATTGTAACGTTCCGGGATCCAACGCAGCTATCTAGAGACAAAATGGATGGTGTTTTCATTAAGAGAATCGTTGCGAAAGCTGGAGATACAGTTGAGGTTTGTAATGGGAAACTCTTTGTGAATGGTGTTGCAAAGGATGAAGAATTCATAGCAGGTCCACCATCATACACACTGGAGTTTACTCATGTGCCTAAAGGCCATGTTTATGTGCTGGGCGATAATCGTAACATCAGCTATGATTCTCATATGTGGGGACCACTTCCTGTGAAGAATATTGTGGGAAGATATGTGATGTCTTGGCACAGGCCAAGAAACATTTGA 588 0.449 MSFLRPCAMYNFFVASPSMRWMPCQSGGFVFRWPGLDGFMRLLLLALLWTMLSEIHYIPSSSMYPTLRVGDRILVEKASFYIRSPAVNDIVTFRDPTQLSRDKMDGVFIKRIVAKAGDTVEVCNGKLFVNGVAKDEEFIAGPPSYTLEFTHVPKGHVYVLGDNRNISYDSHMWGPLPVKNIVGRYVMSWHRPRNI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30613g00006 195 FunFam Peptidase/ serine-type peptidase 60 189 - -
Stsc30613g00006 195 ProSitePatterns Signal peptidases I serine active site. 60 67 IPR019756 GO:0004252|GO:0016020
Stsc30613g00006 195 PANTHER SIGNAL PEPTIDASE I 38 192 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc30613g00006 195 SUPERFAMILY LexA/Signal peptidase 51 189 IPR036286 -
Stsc30613g00006 195 Gene3D Umud Fragment, subunit A 60 191 - -
Stsc30613g00006 195 Pfam Signal peptidase, peptidase S26 39 189 IPR019533 GO:0004252|GO:0006465
Stsc30613g00006 195 CDD S26_SPase_I 54 184 IPR019533 GO:0004252|GO:0006465
Stsc30613g00006 195 ProSitePatterns Signal peptidases I signature 3. 157 170 IPR019758 GO:0004252|GO:0016020
Stsc30613g00006 195 NCBIfam signal peptidase I 41 189 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc30613g00006 195 PRINTS Bacterial leader peptidase 1 (S26A) family signature 108 120 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc30613g00006 195 PRINTS Bacterial leader peptidase 1 (S26A) family signature 51 67 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc30613g00006 195 PRINTS Bacterial leader peptidase 1 (S26A) family signature 152 171 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30613g00006 Stsc-Chr30613 27682 31452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30613g00006 63 184 MADS-box Gene Family AT1G29960 34.146 6.52e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30613g00006 K03100 - gmx:100306121 306.605