Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30609g00002 ATGGTTAGCGAAGAAGAGAAGGTTCTAGAGGAACAACTTGAGCATCAATTGCATGAGCAAAGGGATTCTCTCTCTGCTGTCGACGACGCTCTTCTCTCTGATCCATCCAACCCCGACCTTCTCGCGGTTCATGAGGAACTTGTTCAGGCAATTAAGGATGCAGAGGAAGCACTTCTTCACCTAAAACGTGCAAGATTATTACAGGAAGCAGATTCGGTGCTGCGCAGTACTGATATCTTTGCTGAAGAAGGGAAAGTAGAGCCTCTTGATCCCACAGATGTTGAACCAGAGCCACTGGAGGAAAGTTGTTATTCTGTTGGATCTAAATGCAGATTCCGTCACAAAGATGGGAGATGGTACAATGGTCAAGTGGTGCAGTTGGATAAGTCAGCAGCGAAGATTTCATTCCTTACTCCTACATCTGAGAACATGCTGATCTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTACTAACTGTCGCCTGTCACATGGAATTGATGTTCAATTGTCGTCACTGAAGAAGTATGTCCCGACAATATGGAAGCCATCCCTTGCAGGTTCGAGTATATGGGCAGTCTCAAATGCTCATGCGGGTATTTGGAAGCAAGCTGAGCTTGAGTCTTGGGATGAGGAAGCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCAGCAAAGCTTGGGGCTGAAGAAATGGTATTGTCCGAGTATGCTGAAGTGAGTGACATAGAGAGTGATTCCAGCTTAGAACACTCTGACTCTAGTGACTATGAGGAAGAGGAATCACAAGGTTTAGGATTTCTTGAGAGCACCAACCTACAAAGGGGTGTTCAGACCGAAACTGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGTGTGGCATCGAAAATGATGGCTAATATGGGTTACCGAGAAGGAATGGGTTTAGGCGTAACTGGTCAGGGAATTCTAGATCCCATAACAGTGAAAGTCCTACCGGCCAAACAATCCTTAGATCATGCACTTGAGTCTCAGAAAGGAGAAGAGGACACGGAGAAACAACGCAAGAAACGGAGCAGAGGCGGTAAAAGAAAGCGTGACAAGAAATTCATGGAAGCAATCAGGGCAGCAAAAGAAGAAGAAGAATCGAACGTAGACGTCTTTACACTAATAAATAATCAGCTGGCAGTGCATGGTGAAGCTTTTATTGGGGGATCAGGGAAAAAGCAGAGCAAAGATTCCAGTGAAGGTAAAAAGGTGGATAGGCGAACGTTGATTGCTTATGAGGACGAGGTGAAGGATTTGAAGTTGAGGGTTGAGAAGCTGGAAGCAATAGTGAATATCAACAGAAAAGAGAAGGCTGTTTATGAGGCTGCTATGAGAAAATTAGCTGATACACGCAAGGCGTTAGCCGAAGCTGAAGCCACGCATGCCTCTGCATCAAATGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1482 0.4487 MVSEEEKVLEEQLEHQLHEQRDSLSAVDDALLSDPSNPDLLAVHEELVQAIKDAEEALLHLKRARLLQEADSVLRSTDIFAEEGKVEPLDPTDVEPEPLEESCYSVGSKCRFRHKDGRWYNGQVVQLDKSAAKISFLTPTSENMLICKFFLQQRCRFGTNCRLSHGIDVQLSSLKKYVPTIWKPSLAGSSIWAVSNAHAGIWKQAELESWDEEAGVGQVVFRDDGSSAKLGAEEMVLSEYAEVSDIESDSSLEHSDSSDYEEEESQGLGFLESTNLQRGVQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVTGQGILDPITVKVLPAKQSLDHALESQKGEEDTEKQRKKRSRGGKRKRDKKFMEAIRAAKEEEESNVDVFTLINNQLAVHGEAFIGGSGKKQSKDSSEGKKVDRRTLIAYEDEVKDLKLRVEKLEAIVNINRKEKAVYEAAMRKLADTRKALAEAEATHASASNAVVSKEKEKRWLKF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30609g00002 493 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Stsc30609g00002 493 Coils Coil 422 449 - -
Stsc30609g00002 493 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Stsc30609g00002 493 Gene3D - 118 178 - -
Stsc30609g00002 493 Coils Coil 453 487 - -
Stsc30609g00002 493 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 493 - -
Stsc30609g00002 493 MobiDBLite consensus disorder prediction 338 353 - -
Stsc30609g00002 493 Coils Coil 44 64 - -
Stsc30609g00002 493 MobiDBLite consensus disorder prediction 337 366 - -
Stsc30609g00002 493 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Stsc30609g00002 493 MobiDBLite consensus disorder prediction 243 266 - -
Stsc30609g00002 493 SMART G-patch_5 292 338 IPR000467 GO:0003676
Stsc30609g00002 493 MobiDBLite consensus disorder prediction 1 31 - -
Stsc30609g00002 493 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Stsc30609g00002 493 MobiDBLite consensus disorder prediction 1 25 - -
Stsc30609g00002 493 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Stsc30609g00002 493 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30609g00002 Stsc-Chr30609 32050 36854 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30609g00002 G-patch 3.6e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30609g00002 - - gmx:100796284 736.102