Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30607g00003 ATGAGCCACCACCACCCCAAAACCCTCTCCCTTTCTCTTTCTCTCACTTCACGGTGGTTATTGAAAAACATCATTGCTTTCATTCTCTTCGTTACCGTTAACCAATGTTATGCCCTCACAAGAGACGGCATCCTCTTACTCTCTTTCAAGTACGCCGTTCTAAACGACCCACTCTCTGTTCTTGCCACCTGGAACTACAGCGACGCCACTCCATGTTCATGGAAAGGCGTTTCGTGCTCCAACATTCCCGCTGCTTCACCCAATAACTCCTCCCAGCAGAACAGAGTAACGGCTTTGTCACTTCCAAATTCTAAGCTTGTCGGTTCAATCCCTTCCGATCTAGGCTCCATAGACTACCTTCAAATTCTTGACCTCTCCAACAACTCACTTAATGGCTCCCTCCCCGCTTCGCTCTTCCAAGCCTCCGAGCTTCGGTCACTGAACCTCTCTAACAACCTCATTAACGGCGTGCTTCCATCTTCGGTGGTGCAGCTTCGGAGCCTCCGGTTTCTCAACCTATCAGACAATTACTTGGCGGGAAAAATCCCTGATAATTTGTCAAACATGCAGAACCTAACCGCCTGTTCTTTGAAGAGCAATTACTTCACTGGCTTACTCCCCAGCGGGTTAAGTACCGTGCAGTTTCTGGATGTTTCCAGTAACCTGCTGAACGGGACTCTGCCACCGGGATTTGGCGGTGACCATGTGAGTTACTTGAACATCTCGTACAACAGGTTTACCGGGAGTATACCGCTTCAGTTTGCGGAGAAAATCCCGCGAAACGCAACTGTTGACTTGTCGTTTAACAATTTCACTGGCGAGATTCCGGACTCGCCTGCTCTTTTGAGTCAGAAAACGACAGCGTTTTCAGGGAACGCTGATCTGTGCGGGGAGCCTACAAAGAATCCGTGTCCGATTCCTTCTTCGCCGTCGTCGGAGCCGAGAGCTTCCTCTCCTACTTCTCCGCCGGCGATAGCTGCGATTCCGAAAACGTTCGGTGATTCTCATCCGCTGGCGCCAGACGGCGACGGCGACGGTTCAAGTTCAGGTAACCAGAAACAGAGCGGTGGTCTAAGGAGAGGAACAATTATAGGAATCGCGGTGGGTGACGTCGTCGGCATTGGGATCTTAGCTATGATTTTCTTCTACGTTTATCGGTTGAAGAGGAAGAGAGAAGTGGAGAGTGCGATCAAGGACGAAGCTTCTTTCGCGAGGAGCGAAACGTCGTCGTCTTCGGAGTCGAGAGGGTTCACGAGGTGGTCCTGCTTACGGAAGAGAGTAGAGGAGGAAGAAGAATCGGATAGCACGTGCTCTTCAGGCAGCGAGGAGGAAGCAGCACGTGACGGACACAACCACCACCACCAGAATGGTCGTCAGGAGAGTTATTCGAAGCAGAACGAAGGGTCAGAGCAGCAGAAAAACAAGACTGGGACTTTGGTAACCGTTGATGGCGACAAGGAGCTTGAAGTTGAGACTCTTCTGAAGGCTTCAGCTTACATATTGGGAGCCACTGGTTCAAGCATAATGTATAAGGCGGTGCTTGAAGATGGAACTTCCTTGGCGGTTCGTAGAATCGGTGAGAATGGCGTTGAGAGGTTCAAGGACTTCGAGAACCAGGTTCGGGTTATAGCTAAATTGGTTCACCCGAATTTGGTTCGGATTCGTGGGTTCTATTGGGGACACGACGAGAAGCTCATCATTTATGACTTCGTTCCAAATGGTAGCCTTGCCAATGTTCGTTACAGTAAGTACTTGCATTCTCCATTTCTACAAGCTTCACTCACTTACTCTTCTTGTATATGCATGTTAGCATTATAA 1818 0.4961 MSHHHPKTLSLSLSLTSRWLLKNIIAFILFVTVNQCYALTRDGILLLSFKYAVLNDPLSVLATWNYSDATPCSWKGVSCSNIPAASPNNSSQQNRVTALSLPNSKLVGSIPSDLGSIDYLQILDLSNNSLNGSLPASLFQASELRSLNLSNNLINGVLPSSVVQLRSLRFLNLSDNYLAGKIPDNLSNMQNLTACSLKSNYFTGLLPSGLSTVQFLDVSSNLLNGTLPPGFGGDHVSYLNISYNRFTGSIPLQFAEKIPRNATVDLSFNNFTGEIPDSPALLSQKTTAFSGNADLCGEPTKNPCPIPSSPSSEPRASSPTSPPAIAAIPKTFGDSHPLAPDGDGDGSSSGNQKQSGGLRRGTIIGIAVGDVVGIGILAMIFFYVYRLKRKREVESAIKDEASFARSETSSSSESRGFTRWSCLRKRVEEEEESDSTCSSGSEEEAARDGHNHHHQNGRQESYSKQNEGSEQQKNKTGTLVTVDGDKELEVETLLKASAYILGATGSSIMYKAVLEDGTSLAVRRIGENGVERFKDFENQVRVIAKLVHPNLVRIRGFYWGHDEKLIIYDFVPNGSLANVRYSKYLHSPFLQASLTYSSCICMLAL 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30607g00003 605 ProSiteProfiles Protein kinase domain profile. 495 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30607g00003 605 Gene3D Ribonuclease Inhibitor 40 209 IPR032675 -
Stsc30607g00003 605 SUPERFAMILY Protein kinase-like (PK-like) 500 586 IPR011009 -
Stsc30607g00003 605 FunFam Leucine-rich repeat receptor-like protein kinase 213 306 - -
Stsc30607g00003 605 Gene3D Phosphorylase Kinase; domain 1 457 570 - -
Stsc30607g00003 605 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Stsc30607g00003 605 MobiDBLite consensus disorder prediction 292 357 - -
Stsc30607g00003 605 MobiDBLite consensus disorder prediction 428 479 - -
Stsc30607g00003 605 SUPERFAMILY L domain-like 41 299 - -
Stsc30607g00003 605 Gene3D Ribonuclease Inhibitor 210 306 IPR032675 -
Stsc30607g00003 605 Pfam Leucine rich repeat 120 178 IPR001611 GO:0005515
Stsc30607g00003 605 PRINTS Leucine-rich repeat signature 165 178 - -
Stsc30607g00003 605 PRINTS Leucine-rich repeat signature 120 133 - -
Stsc30607g00003 605 MobiDBLite consensus disorder prediction 441 460 - -
Stsc30607g00003 605 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 39 212 - -
Stsc30607g00003 605 MobiDBLite consensus disorder prediction 461 479 - -
Stsc30607g00003 605 PANTHER OS05G0588300 PROTEIN 197 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30607g00003 Stsc-Chr30607 13677 15494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30607g00003 25 583 Receptor kinase-like Gene Family AT4G37250 52.880 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc30607g00003 LRR_8 3.7e-09 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30607g00003 - - ahf:112799685 875.93