Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30604g00004 ATGTCTAAGACTCAAGAGAAGGATCAAGGTATCATGCTATTTGGAAGGAAGATTCCATTATTGCCTGAATCTCAGATTCCAGCCATCTCTAGAGACATCATGGACCCAAAACAAGAAAAGAATTCTTCAGATTATTCAACGGATGATAATAATAATAATAAAGAGAATTCCCAACACAAGGATGAAGCAACAACAACAGTAAATTCCAACAACCATGTAGAAGAAAATGGCACAAACGAAGAAGAAGAAGATCACAAAACCATGAAGAAACCAGACAAGATTATTCAGTGTCCAAGATGCAAGAGCATGGACACAAAATTCTGCTACTTCAACAACTACAACGTCAACCAACCCCGCCATTTTTGCAAAAACTGCCAGCGCTACTGGACCGCCGGCGGAACAATGAGGAATGTCCCCGTTGGCGCCGGCAGACGCAAGCACAAGCACTTAGCTTCGCAGTTCCGAACTGTCCTAGTAGCCGCCGCCTCCGCCACCGCCGCGGCCGGAGTTTCAGATCCCACAAACTCATGTTCAAAAGAAAATAATAATAGTAACGATGGAAGTTGCGGTACCGTGTTGAAATTCGGACACGAAAATTTATCTATCAATTATTGTCCTGAATATGGAGAGGAATCATCACCGACGATGTATGAATCTTCTTCAGAACACAACAACAACAACGTTAACAATGACTCATCAAAATTGTTGCAGTGTTACCCTGTTCCTCCATGGGTTATGCCTTGGAACAATGTTGTTCCACAACATTATCATGCTCTAAATAATTCAATTCAATGGTGTCCAACACCAATGGCGGCGGTGGCAGCTACAATTCCTGTTCATCTTGTTCCAGGGCCATACTGGGATGGAACACCTATGTGGGGTGCACCAATAGGATCAAATCATAGCCGTTCATCGCCTTCTTCGTCCACTAGTAACAATAGCTCCTGTTCTGGCAATGGTAACAACAATAATTCTCCAATACTTGGGAAGCACAACAGAGATCAAAGCACTGTTTTCATTGATGAACAGAAATCAAGTAAGTGTTTTTTGGTTCCAAAGATTCCAACAAGATTTGATGAGTCAAATAACAATGAGGGTTCAGTGAGTCCTATTTGGGCTACATTGGCCATGATACATGATAACAATGCTTTGAAGAAAATAGCAGCTAAAGGAGAACAAGGCAAAGAGAGTTTATTGCATGTGACTGAAATCCTGGAAGCCAGTCCAACACCAATTTCTCATGCTCATGCATGCGACGAATTCTCTGATGCATTTTAA 1278 0.4202 MSKTQEKDQGIMLFGRKIPLLPESQIPAISRDIMDPKQEKNSSDYSTDDNNNNKENSQHKDEATTTVNSNNHVEENGTNEEEEDHKTMKKPDKIIQCPRCKSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKHLASQFRTVLVAAASATAAAGVSDPTNSCSKENNNSNDGSCGTVLKFGHENLSINYCPEYGEESSPTMYESSSEHNNNNVNNDSSKLLQCYPVPPWVMPWNNVVPQHYHALNNSIQWCPTPMAAVAATIPVHLVPGPYWDGTPMWGAPIGSNHSRSSPSSSTSNNSSCSGNGNNNNSPILGKHNRDQSTVFIDEQKSSKCFLVPKIPTRFDESNNNEGSVSPIWATLAMIHDNNALKKIAAKGEQGKESLLHVTEILEASPTPISHAHACDEFSDAF 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30604g00004 425 MobiDBLite consensus disorder prediction 1 90 - -
Stsc30604g00004 425 MobiDBLite consensus disorder prediction 75 90 - -
Stsc30604g00004 425 PANTHER CYCLIC DOF FACTOR 2 1 418 IPR045174 GO:0003700|GO:0006355
Stsc30604g00004 425 ProSiteProfiles Zinc finger Dof-type profile. 95 149 IPR003851 GO:0003677|GO:0006355
Stsc30604g00004 425 MobiDBLite consensus disorder prediction 297 331 - -
Stsc30604g00004 425 ProSitePatterns Zinc finger Dof-type signature. 97 133 IPR003851 GO:0003677|GO:0006355
Stsc30604g00004 425 Pfam Dof domain, zinc finger 92 149 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30604g00004 Stsc-Chr30604 33488 36057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30604g00004 5 416 C2C2-Dof Transcription Factor Family AT3G47500 31.211 7.34e-49 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30604g00004 zf-Dof 3.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30604g00004 - - ahf:112696882 456.447