Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30598g00011 ATGGACAAAGCTGAGAGAGAGACGCACGACTTCATGAACGTCGACTCTTTCTCTCAGCTTCCCTTCATCCGCCCCGCTCCTCCTCCCAAGGAGAAGGGCATCAGACTCTTCGGCATAGAATTTGGTGATGCCCCGCCAGGTTCTGCTGCCGAAGAGTCTGAGTCCGCTGACACAACCACTAACGAAAACAGCACCACCAACAACATCAACTTAGAGAGTAATAACAATAACAATAACAGTAATAACGGCGAGAGTAGCCGGAGGTTCGAATGCCACTACTGCTGTAGAAACTTCCCGACTTCTCAAGCCCTCGGCGGACACCAAAACGCACACAAGAGAGAGAGGCAACACGCGAAACGACAACACCTTCAGTCAGCCATGGTTCACGGTTCTCTCCCCGACGGCCAGCACCACCAACTTTACGGACTCATGAACTACAGTAGGTTCGGATCTTTCGCTTCTTCTCCAACAATGGCTGCTTTTCCAACATGGAATAACAACAACGCTGCTGGAAGATTCTATGGAACTTCCTCATCTTATTCTCCTACTTCTTCTCATCATCATCATCAACAGCAGCAGCATCTTCAGCAACCCATCAATGGTAGCCCCTTGTCCCTGTGGCGAATCCCTAACGGTGGAGGTAGTAATAATAGCCCTATGTTTGGGCGGGAACGGCCGCCGCAAAATCCATTTGGTTTGGTTGCAGGGGAAGATGTGAACGGAAGAATAGGAGCAACGAGGGTCCAATTAGGTGGCAATAATAATAATAATGGTTCACAAAACGGGTATGTTTATGACTCCAAAACAAGCGTTAGTGACCATCTCAGCTTGGATCTTCATCTGTAA 846 0.487 MDKAERETHDFMNVDSFSQLPFIRPAPPPKEKGIRLFGIEFGDAPPGSAAEESESADTTTNENSTTNNINLESNNNNNNSNNGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRQHLQSAMVHGSLPDGQHHQLYGLMNYSRFGSFASSPTMAAFPTWNNNNAAGRFYGTSSSYSPTSSHHHHQQQQHLQQPINGSPLSLWRIPNGGGSNNSPMFGRERPPQNPFGLVAGEDVNGRIGATRVQLGGNNNNNGSQNGYVYDSKTSVSDHLSLDLHL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30598g00011 281 MobiDBLite consensus disorder prediction 52 86 - -
Stsc30598g00011 281 Gene3D Classic Zinc Finger 58 136 - -
Stsc30598g00011 281 PANTHER ZINC FINGER PROTEIN GIS 1 281 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Stsc30598g00011 281 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Stsc30598g00011 281 MobiDBLite consensus disorder prediction 1 86 - -
Stsc30598g00011 281 Pfam C2H2-type zinc finger 88 113 - -
Stsc30598g00011 281 MobiDBLite consensus disorder prediction 175 230 - -
Stsc30598g00011 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Stsc30598g00011 281 SUPERFAMILY beta-beta-alpha zinc fingers 86 117 IPR036236 -
Stsc30598g00011 281 MobiDBLite consensus disorder prediction 175 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30598g00011 Stsc-Chr30598 38086 38931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30598g00011 1 281 C2H2 Transcription Factor Family AT2G41940 38.983 2.05e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30598g00011 - - gmx:100806594 236.884