Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30595g00002 ATGCAGCTTTGGTGTTTGATGTTATGCTCGGGGTTTCTGCCAATCAAGAAAGTGATGCCCTGGTGTGAATGTGTGATCCGCATTGATCTTGGAAATGCAAATCTTTCGGGTCAAATAGTTCGAGAACTTGGTCAGCTTCCGAATTTGCAAAGCCTGGCTCTTTTCGATAACAATTTAACCGGGCCTATCCCGAATGAGCTTGGAATGTTGACAAATTTGGATACGCGTCTCAACAACAACAATTTGTCCGGGAAAATTCCCATGTCATTGACCAATATTATGAGTCTAAAAGTCCCTGATTTATCAAACAACAAGTTAACTGGAAATATTCCCGTCAATGGTTCATTTTCATCATTTACCCCTGTCAGTTTTGGAAATAACCTCTTGAATAAAACAATAAATCCATCTCCATGCTATGTTCCGCCACAAAATACCACCTCAGGTAAGAATGCCATTGGAGCTATTGCTGGAGGAGTTGCTGTTGGAGCTGCTTTATCCATTGCAGTCCCCGTGATTTCAGTTGCTTACTGGCTACGAAGGAAACCACAGGACGACTACATTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGCTTGCTTAAAAAGTTGTCTCTACATGAGCTGCAAATTGCTACAGATCACTTCAGCGTAAAAAATTTGCTGGGAAAGGGTGCATTTGGCAAGGTTTATCAAGGACGTTTAGCTGATGGCACTGCTGTAGCAGTGAAACGACTTAAAGAGGAACGCTCCAACAGTGAGAACTTTCAGTTTCAAACTGAAGTGGAAATGATCAGCAGAGCTAAGCATCGTTATTTGCTTCAACTGCTCGGTTTTTGTATGACTCCTACTGGACGTATGCTTGTGTATCCTTTGATGTTAAATGGAAGCGTAGCATCTTGCTTAAAAGCTCAAAAGCTATTGAATGTTCTTAAGTTAAATCTCAGAACTTGTATTCAATATTGGTGGATACTACCATGA 984 0.4146 MQLWCLMLCSGFLPIKKVMPWCECVIRIDLGNANLSGQIVRELGQLPNLQSLALFDNNLTGPIPNELGMLTNLDTRLNNNNLSGKIPMSLTNIMSLKVPDLSNNKLTGNIPVNGSFSSFTPVSFGNNLLNKTINPSPCYVPPQNTTSGKNAIGAIAGGVAVGAALSIAVPVISVAYWLRRKPQDDYIDVPAEEDPEVHLGLLKKLSLHELQIATDHFSVKNLLGKGAFGKVYQGRLADGTAVAVKRLKEERSNSENFQFQTEVEMISRAKHRYLLQLLGFCMTPTGRMLVYPLMLNGSVASCLKAQKLLNVLKLNLRTCIQYWWILP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30595g00002 327 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 27 314 - -
Stsc30595g00002 327 Pfam Protein tyrosine and serine/threonine kinase 219 307 IPR001245 GO:0004672|GO:0006468
Stsc30595g00002 327 SUPERFAMILY L domain-like 20 136 - -
Stsc30595g00002 327 Gene3D Phosphorylase Kinase; domain 1 186 292 - -
Stsc30595g00002 327 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 40 133 - -
Stsc30595g00002 327 Gene3D Ribonuclease Inhibitor 9 138 IPR032675 -
Stsc30595g00002 327 ProSiteProfiles Protein kinase domain profile. 217 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30595g00002 327 SUPERFAMILY Protein kinase-like (PK-like) 204 309 IPR011009 -
Stsc30595g00002 327 ProSitePatterns Protein kinases ATP-binding region signature. 223 245 IPR017441 GO:0005524
Stsc30595g00002 327 FunFam Somatic embryogenesis receptor kinase 1 186 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30595g00002 Stsc-Chr30595 5044 7852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30595g00002 25 306 Receptor kinase-like Gene Family AT1G34210 58.567 1.33e-101 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc30595g00002 PK_Tyr_Ser-Thr 7.2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30595g00002 K13416 - twl:119982367 332.028