Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30588g00006 ATGAGAAGAGGAGATGGTGGACTCTCCATGGATTCGGATCCGATTGCGAGGTTCTTCCTTCGCAGTAATAATAATAATAACCCCGTTGTTCTCAACTCCTTTCCTGAGGATAACACCGTTGTGAACACGACGACGGATCGTGTCATCGCCACCGCCACCGCCACTACCGCTACCTCCGCCTCGTTACAACAAGTCAACCTTAGCTCTTGTTCTTCCAACAACAACAACTTCATCAATCATGATCATCATCATCACAACAACACGAGACAAGAGTTAGACTTCATCCTCACTCCCAACAATAAATACGGTGACAACCTTGTTGCCCGTGACGACGACGACAACAACAACCACCATAATCATCATTCCTTGGAATTCAAAGTAAACACCGGTTTGAATCTTCTCACTACCAGCACAAGTAGTGATAAACAACCACCAACGGAGGAGGAAGATAACAACACACCGCTAAATTCGCAAGACAGAAGAAGAACTAAACCTGAGGTGGGTGTAATTGAAGCGGAGATAGAGAGAGTGAAGGTGGAGAACGAGAGGTTAAGAGAGATGATTGACGAGGCAAACACTCATTACAGTGCGCTTCAGATGCACCACGTGAATCTCATGAATGACAAGAACAAGAACAAGAAGCAATTAATAGGTAATAATAGTACTAACAGTGATCAAAGAGTATTGGTTCCAAGGCAGTTTATGGATCTTGGGTTAGCAACAAATGCCGATGAAGATCATGATGCCGATGCCGGTGACAACAAAGAAGAACCGTCTTCGTCGTCAAGATCAAGATCAAGGTCACCATATGCATCGGGGAATTCGAAGAATAGTAGTGAACAAGAGAAGAAGAGAATTGAAAGAGAAGAAAGCCCGATCCAAGAACAAGAAGCTAAGAAAATTCAAAGGTCGAGTAGTCCAACAAAACATAATAATAATAACAATAATGTTGACCAACAAGCTCATGAGGCCACTATGAGGAAAGCTAGAGTTTCTGTTAGAGCTCGATCGGAAGCACCTATGATAACTGATGGGTGTCAATGGCGAAAGTATGGACAGAAGATGGCTAAAGGAAACCCATGCCCTCGAGCTTATTATCGTTGCACCATGGCTTCCGGTTGTCCAGTTAGGAAACAGGTACAAAGGTGTGCTGAGGACAGAACAGTGTTAGTGACAACATATGAAGGGAAGCACAACCACCCTTTGCCACCAGCAGCAATGGCCATGGCACAAACCACATCCTCAGCTGCAACGATGCTCCTCTCTGGTTCATCAATGTCAACCAATGACAACAACAACCTTATCAACAATGCAACAAACTTCTTAGCAACAACTCTTCTCCCCTCATCATCGTCGTCGCCGTCATCAGCTACATCAACCATGGCTACAATCTCAGCTTCAGCACCATTCCCAACTATCACGTTGGACCTCACTCACGATGATCACTCCCCCAACAACAACAACAATCCTTTTCAGTTCCCAATAAGGCCTAGTACAATTCCACAAATACCCTTCCACAATATTTTTGGTGCCCATCACCATGATAATAATAACAATAATAATAACCAATCAAAGTTTTGCGGTCTACAAATGCCTAATACTAATAATAATAATAATCAAGATCATAGTAGTAATAATAATATTGTTGATACAGTTGGTGCTGCAATTGCATCTGATCCAAACTTCACTGCTGCTTTGGTATCTGCTATTAGTTCCATTATTGGTGCTGCTGCTACTACTCCTACTCAACAAAACAACAACACTGCTATTGGCAATAACAGCAATGGCAATGGCAGCAACAACAACAAGAACAATATATAG 1821 0.4278 MRRGDGGLSMDSDPIARFFLRSNNNNNPVVLNSFPEDNTVVNTTTDRVIATATATTATSASLQQVNLSSCSSNNNNFINHDHHHHNNTRQELDFILTPNNKYGDNLVARDDDDNNNHHNHHSLEFKVNTGLNLLTTSTSSDKQPPTEEEDNNTPLNSQDRRRTKPEVGVIEAEIERVKVENERLREMIDEANTHYSALQMHHVNLMNDKNKNKKQLIGNNSTNSDQRVLVPRQFMDLGLATNADEDHDADAGDNKEEPSSSSRSRSRSPYASGNSKNSSEQEKKRIEREESPIQEQEAKKIQRSSSPTKHNNNNNNVDQQAHEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCAEDRTVLVTTYEGKHNHPLPPAAMAMAQTTSSAATMLLSGSSMSTNDNNNLINNATNFLATTLLPSSSSSPSSATSTMATISASAPFPTITLDLTHDDHSPNNNNNPFQFPIRPSTIPQIPFHNIFGAHHHDNNNNNNNQSKFCGLQMPNTNNNNNQDHSSNNNIVDTVGAAIASDPNFTAALVSAISSIIGAAATTPTQQNNNTAIGNNSNGNGSNNNKNNI 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30588g00006 606 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 131 588 IPR044810 GO:0003700
Stsc30588g00006 606 SUPERFAMILY WRKY DNA-binding domain 335 403 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 143 167 - -
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 278 297 - -
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 105 124 - -
Stsc30588g00006 606 Gene3D WRKY domain 327 404 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 512 546 - -
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 243 325 - -
Stsc30588g00006 606 Coils Coil 167 194 - -
Stsc30588g00006 606 ProSiteProfiles WRKY domain profile. 337 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30588g00006 606 SMART WRKY_cls 342 402 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 510 546 - -
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 125 142 - -
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 105 167 - -
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 298 322 - -
Stsc30588g00006 606 FunFam probable WRKY transcription factor 31 327 404 - -
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 582 606 - -
Stsc30588g00006 606 Pfam WRKY DNA -binding domain 344 401 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 243 262 - -
Stsc30588g00006 606 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30588g00006 Stsc-Chr30588 28178 32180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30588g00006 91 574 WRKY Transcription Factor Family AT1G62300 44.401 4.90e-110 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc30588g00006 WRKY 6.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30588g00006 - - ahf:112737496 544.273