Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30586g00004 ATGACCTCTGCTAATGACATCACTGATAATGAAGCTGATGGGAAGCAACAGTCGGAATCAGAGATGCAGTCTTCCTCTGCAAACGGAACTTCTGATCCAGATACTGATACCCAGAATGTTAAGTTTGCAACGCCTGCACAGCTTGGAGCTGGGCTGGCTATGGCACCGCCGGGTTATCCATATCCAGATCCTTACTATGGAAGTATCTTTTCTCCCTATGATACACAAGCTTATGCCCCACAGCCGTATGGTGGACAACCAATGGTCCATTTTCAGTTAATGGGAATTCAGCAAGCCGGTGTTCCTCTGCCAACTGATGCTGTTGAGGAGCCTGTGTTTGTAAATGCGAAACAATATCATGGTATATTAAGACGAAGGCAATCCCGTGCCAAAGCTGAATCAGAGCGTAAAGCTATTAGGAATAGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCGCTCCGAAGAGCAAGAGGATGTGGAGGCCGATTCCTAAATGCAAAGAAAGATGAGAACGGACATAACGATGCGGCATCAACTGACAAATCACAGTGCAATATCAACCTCAATTCCGATAAAAGTGACATCGCTTCATCAGATAGGACAGTCTAA 615 0.4569 MTSANDITDNEADGKQQSESEMQSSSANGTSDPDTDTQNVKFATPAQLGAGLAMAPPGYPYPDPYYGSIFSPYDTQAYAPQPYGGQPMVHFQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESERKAIRNRKPYLHESRHLHALRRARGCGGRFLNAKKDENGHNDAASTDKSQCNINLNSDKSDIASSDRTV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30586g00004 204 MobiDBLite consensus disorder prediction 171 204 - -
Stsc30586g00004 204 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Stsc30586g00004 204 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Stsc30586g00004 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 201 IPR001289 GO:0003700|GO:0006355
Stsc30586g00004 204 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Stsc30586g00004 204 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Stsc30586g00004 204 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Stsc30586g00004 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Stsc30586g00004 204 Gene3D - 108 169 - -
Stsc30586g00004 204 MobiDBLite consensus disorder prediction 179 198 - -
Stsc30586g00004 204 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30586g00004 Stsc-Chr30586 18762 22032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30586g00004 49 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 65.161 5.00e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc30586g00004 CBFB_NFYA 2.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30586g00004 K08064 - gmx:100499754 319.701