Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30586g00001 ATGGAGAATAATCCACTTGAACTTGATAGACCTGTAACAAGTAAAAGAAAATTCAAGGAGTTATTGCTTCAAAAGGATAATCAATTTTGTGCTGACTGTAATGCTGCACAACCTAAATGGGCGTCGGCTAATATTGGAGTTTTTTTATGCTTTAAATGTTACAATGTGCACAGAAGTCTCAATACTCATGTATCAAGGGTTTTGCCTTTGGGGGATGAATGGTCAGATGATGATATTGATGCAATGGTTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAAGCTTATATTCCAGAAGGATATGCGAAACCCAGTCCAGATGCCAGTCAGGAGGAGCGCACAAAATTCATTCGGGCAAAATATGAATATCAAGAATTTTTGAAACCAAGTTTGCGCATTGTGTCTTCAAAATATCATCAAGCAAGAAAGAACGGGAGAGTTTATCGGAAAGTTGCTGGTGAGAGTGATTAG 477 0.3753 MENNPLELDRPVTSKRKFKELLLQKDNQFCADCNAAQPKWASANIGVFLCFKCYNVHRSLNTHVSRVLPLGDEWSDDDIDAMVEVGGNSSANSIYEAYIPEGYAKPSPDASQEERTKFIRAKYEYQEFLKPSLRIVSSKYHQARKNGRVYRKVAGESD 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30586g00001 158 Pfam Putative GTPase activating protein for Arf 16 130 IPR001164 GO:0005096
Stsc30586g00001 158 SMART arf_gap_3 15 136 IPR001164 GO:0005096
Stsc30586g00001 158 CDD ArfGap 18 123 - -
Stsc30586g00001 158 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Stsc30586g00001 158 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Stsc30586g00001 158 FunFam stromal membrane-associated protein 1 isoform X1 3 134 - -
Stsc30586g00001 158 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 128 IPR001164 GO:0005096
Stsc30586g00001 158 Gene3D Arf GTPase activating protein 7 135 IPR038508 -
Stsc30586g00001 158 SUPERFAMILY ArfGap/RecO-like zinc finger 15 131 IPR037278 -
Stsc30586g00001 158 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 13 143 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30586g00001 Stsc-Chr30586 7175 9772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30586g00001 8 139 C2H2 Transcription Factor Family AT4G21160 63.158 2.83e-63 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30586g00001 K12486 - cave:132170990 216.853