Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30583g00002 ATGCCAGAAAACAGGCAGGTTCTGAGGAATGCTGCTTCTAATCAATCCGGTGATAACATTGAAGAAGCAATTCGGCGATTGAAAATCAATGACAATCGGGATAGAGATGCGGCGGGTCAAACTAGCCCTTATCCGGATCGTCCCGGCGAGCCTGATTGCTTATATTTTCTGAGGACTGGAATGTGTGGTTATGGGACTAACTGCCGCTACAATCACCCTGCTCATGTTTCACTGGGTAATCATTATGGTGAAGAGCTCCCTGAGAGAAATGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCGTCATGTAAATATCATCATCCAAGGGACAGGCGAGGTGCTGCTCCTGTGTCATTCAATGCTTTAGGCCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGTTCATGTAAGTTTGGAGTAGCCTGCAAGTTTCACCATCCGCCGCATGCTTCTTTTGGAGCTTCTGGAGTAGCTGGATCTCCCACCTCAATTATTCCCGCATCGGGATATGTTGGTGGATATCCATATTCCTTACCGAGAATGCCATATTTATCTGGGCAGGGCCTTCAGTCTTATGTGCCTCCATTCTTTTCTTCTCCACAAGGCATTATACCTGGGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCTGCAATGTCTACTGGTTTTCTTGGACCTAATCTTGTTTACGACTCTATGAATCCGGGCGAGTCACTTTCTGGTGGGCAGGTAGTAGGTCTTACTCTCCCAGATAGACCTGATCAGCCTGAATGTAGATACTATATGAACACCGGGACCTGCAAGTATGGATCTGATTGCAAGTTCCACCACCCCAAAGAAAGAATCACCCAATCATTCATAAACCCTCTAGGCCTTCCTGTGCGACCTGGACAAGCTATATGTTCTTATTATAGAATCTATGGAATATGCAAGTATGGCCCAACATGCAAATTTGATCATCCAGTTTTGGCAATCCCACAGAACTATCGCTTGGCCACACCTACTGCTTTATCTGTACTGGACACCCCTCTGGATGGCAATCCAAGAGGGACTTTCCAACCACCCGAGACATCACCATCTAAATTATCAAGTGACAAGCATCAGCACTCGGGTAATAATATCAATGATGCACAGGCAGCTGAAGATTCATCCAAACAAGCTGATCATACCACTTCGACCTCCTTTGAAGCTGCCTCGGAATCCTCCTTACATGACCAAGATGCTTGA 1269 0.4586 MPENRQVLRNAASNQSGDNIEEAIRRLKINDNRDRDAAGQTSPYPDRPGEPDCLYFLRTGMCGYGTNCRYNHPAHVSLGNHYGEELPERNGQPDCEYFLKTGTCKYGSSCKYHHPRDRRGAAPVSFNALGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPPHASFGASGVAGSPTSIIPASGYVGGYPYSLPRMPYLSGQGLQSYVPPFFSSPQGIIPGQSWNNYMGSMNPAMSTGFLGPNLVYDSMNPGESLSGGQVVGLTLPDRPDQPECRYYMNTGTCKYGSDCKFHHPKERITQSFINPLGLPVRPGQAICSYYRIYGICKYGPTCKFDHPVLAIPQNYRLATPTALSVLDTPLDGNPRGTFQPPETSPSKLSSDKHQHSGNNINDAQAAEDSSKQADHTTSTSFEAASESSLHDQDA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30583g00002 422 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Stsc30583g00002 422 Gene3D - 14 83 - -
Stsc30583g00002 422 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Stsc30583g00002 422 SUPERFAMILY CCCH zinc finger 269 295 IPR036855 GO:0046872
Stsc30583g00002 422 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30583g00002 422 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Stsc30583g00002 422 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Stsc30583g00002 422 Gene3D - 85 169 - -
Stsc30583g00002 422 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Stsc30583g00002 422 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Stsc30583g00002 422 SUPERFAMILY CCCH zinc finger 307 335 IPR036855 GO:0046872
Stsc30583g00002 422 SUPERFAMILY CCCH zinc finger 133 161 IPR036855 GO:0046872
Stsc30583g00002 422 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Stsc30583g00002 422 Gene3D - 267 339 - -
Stsc30583g00002 422 MobiDBLite consensus disorder prediction 354 422 - -
Stsc30583g00002 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Stsc30583g00002 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 293 IPR000571 GO:0046872
Stsc30583g00002 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 335 IPR000571 GO:0046872
Stsc30583g00002 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 116 IPR000571 GO:0046872
Stsc30583g00002 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Stsc30583g00002 422 PANTHER PROTEIN PHOSPHATASE RELATED 22 368 - -
Stsc30583g00002 422 SMART c3hfinal6 309 336 IPR000571 GO:0046872
Stsc30583g00002 422 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Stsc30583g00002 422 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Stsc30583g00002 422 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Stsc30583g00002 422 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Stsc30583g00002 422 MobiDBLite consensus disorder prediction 365 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30583g00002 Stsc-Chr30583 18269 22104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30583g00002 1 413 C3H Transcription Factor Family AT1G04990 46.572 2.84e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30583g00002 zf-CCCH 4.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30583g00002 - - gmx:100812856 654.825