Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30583g00001 ATGCGTCGAGGTAGGGATGCCGTCGCCGCAGCAGCAGATCCAACACAGCCAAACGCCGATTCAAGAAACAACGTCGGCGAAACGCGGTTCCGCGGCGTGAGGAAGCGCCCATGGGGAAGATTCGCGGCGGAGATAAGGGATCCATGGAAGAAGGCTCGCGTGTGGCTTGGAACCTTCGATTCCGCCGAGGACGCCGCCAGAGCCTACGACGCTGCCGCCCGATCCTTCCGTGGACCGAAAGCAAAGACCAATTTTCCGTTCCCCAACGCCGAAATCGGAATCTCGCACTCTCAGATTCCGATTCACGGTTACGATGATCCGGTTAACGGGTTCGGGAAGTTTGAACCGGTTCAGGTGAACCGGCCAACGAGCAGCGGCATGAGCAGCACCGTCGAATCGTTCAGCGGACCTAGGGTTTCGTCAACGGCGGCACTTCCGGCGGTTGATCGGCGCCGGAGGAAGCCGGTTGTTGTTCCGGTTGACGATTGCCACAGCGATTGCGATTCGTCATCAACGATCGACGACGAGGATTCGTTCAGGAAAACCCTAAATTTCGATCTAAACCTTCCGCCGCCGGAGGAAGACGGCGTCGGTTTCACAGACGAGGAGATTCGCGCCACCGCCTTGTGCCTCTGA 636 0.5881 MRRGRDAVAAAADPTQPNADSRNNVGETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPFPNAEIGISHSQIPIHGYDDPVNGFGKFEPVQVNRPTSSGMSSTVESFSGPRVSSTAALPAVDRRRRKPVVVPVDDCHSDCDSSSTIDDEDSFRKTLNFDLNLPPPEEDGVGFTDEEIRATALCL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30583g00001 211 CDD AP2 28 86 IPR001471 GO:0003700|GO:0006355
Stsc30583g00001 211 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Stsc30583g00001 211 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Stsc30583g00001 211 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Stsc30583g00001 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 177 - -
Stsc30583g00001 211 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Stsc30583g00001 211 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Stsc30583g00001 211 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Stsc30583g00001 211 MobiDBLite consensus disorder prediction 1 28 - -
Stsc30583g00001 211 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Stsc30583g00001 211 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30583g00001 Stsc-Chr30583 2888 4221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30583g00001 1 159 AP2-EREBP Transcription Factor Family AT1G50640 58.235 6.07e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30583g00001 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30583g00001 K09286 - qsa:O6P43_014526 220.32