Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30582g00005 ATGGAAAATATTAATAAGGATACAGAGAATGATGCAAATAGTTTCACTGCAATAAGGGGAAGCGTGGAAGAAGCAGGTGGCGGCAGCGGCGATAGCGGTGGGACGACGACGGTGGATGACGTGGCTTTGAAAAAAGGTCCTTGGACAGCGGCAGAGGATGCAATTTTGGTTGAATATGTGACAAAGCACGGTGAAGGGAACTGGAATGCGGTGCAGAGGAACACGGAGTTGGCACGGTGCGGAAAGAGTTGCAGGCTAAGATGGGCAAATCACTTGAGACCCAATTTAAAGAAAGGTGCTTTCTCTCCTGAGGAAGAAAAGCTCATCATTGAACTCCACGCTCAGTTTGGAAACAAATGGGCTCGAATGGCTGCATTGTTACCTGGTAGAACTGACAATGAAATCAAGAATTATTGGAACACAAGAATAAAGAGAAGGCAAAGGCAAGGGCTTCCTCTGTATTCAGATGACCCTGATCGTCCAACTATAGCAACCACACCCACCACCCCAATAACCCATCCAATAACAAACTTCATCAACAACAACAACAATTCTCCCACACCCAAATTTGAGTTTCTCCACCAAAACTATCTTCATTCCCAGTCTCCACACCATCACCATCACCACCACCTAAACCTAAACCAAAACTATTCTCCTTTAAATTCACCACTTCATCATCATAGAGCACCCTCCTATTCCCCTCGCCCTTTCTTGGATGCTACTACTCTTTCTTCTTTATCCTTTTCGGCACACTCTCCGCTATCTACTTCCCTAACATCTTCACTACCTTTGCCGTTTACCTTCCAAAGACCGGCACCATTGTTGTGCAACCCTCTTCGCTTCAAGCGCTTTCGTTCGACTCCGGATTTCAACCTTACTGACTCCTCCAATGTTAATCCCACCATACCAACAACCGCCCATTTATTTGATATTGATAACGGGTTTAGGTTCCCCGTTCATCTCAACTCGCCTTCTTCTTTCTCACACTTCTTTCAGAACCCGTCCTTGTTGGATCTCGAAAGAAATAATGTTAACATGGTCTCTTCCACTACTACTTCTTCTCCTTCTAATTTTCAATGCAAGATGGAGCTCCCTTCAAACCAAATAGAGCCATTGGAGGTTAAGCTTGATGTTGAGTACAATGACCTTAATTCTTTGAATACAAATAATGGGTTGGTTGGGGATATTCTATTATCTGAAACTCAAAACTTTGCTTCTGGAAATCAAGTTTTCAAAAAGCGAAACTACTTGAGCTTGAATGAAGGGCATAATGAAGTGTTTGATGGTTGCCAAAGCTTTGATGACTCGCCTCTTAGCTCTCTTTACTGGCCTTCTGCTTCAGGCCAACAAGATTGGCAGCATAATAATACAACAGAAATTGCTAATAATGTTGATGACAATTTTGGAGTTGATATAAAGCCTCCAGAGGCTGGATGCTTATTTACGGTGGCAAGAATTTTGGTTGATACTTTTCAGTGGGAGATGATCAATGAGTGGATAGGTATGGTAGTGGAGAATCATCACTTTAGCAATGAGGTTTATATTGGGCCGGCGCATCCTGAGCGTGTTATGTGTCCGAGAGGGTCTGATGAGTCGAACTACTTGTTAAGCCCACAAGACAAGGAGAGATAA 1632 0.4344 MENINKDTENDANSFTAIRGSVEEAGGGSGDSGGTTTVDDVALKKGPWTAAEDAILVEYVTKHGEGNWNAVQRNTELARCGKSCRLRWANHLRPNLKKGAFSPEEEKLIIELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDPDRPTIATTPTTPITHPITNFINNNNNSPTPKFEFLHQNYLHSQSPHHHHHHHLNLNQNYSPLNSPLHHHRAPSYSPRPFLDATTLSSLSFSAHSPLSTSLTSSLPLPFTFQRPAPLLCNPLRFKRFRSTPDFNLTDSSNVNPTIPTTAHLFDIDNGFRFPVHLNSPSSFSHFFQNPSLLDLERNNVNMVSSTTTSSPSNFQCKMELPSNQIEPLEVKLDVEYNDLNSLNTNNGLVGDILLSETQNFASGNQVFKKRNYLSLNEGHNEVFDGCQSFDDSPLSSLYWPSASGQQDWQHNNTTEIANNVDDNFGVDIKPPEAGCLFTVARILVDTFQWEMINEWIGMVVENHHFSNEVYIGPAHPERVMCPRGSDESNYLLSPQDKER 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30582g00005 543 Gene3D - 100 146 - -
Stsc30582g00005 543 Gene3D - 44 97 - -
Stsc30582g00005 543 ProSiteProfiles Myb-like domain profile. 40 92 IPR001005 -
Stsc30582g00005 543 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 92 IPR017930 -
Stsc30582g00005 543 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 439 - -
Stsc30582g00005 543 Pfam Myb-like DNA-binding domain 45 92 IPR001005 -
Stsc30582g00005 543 Pfam Myb-like DNA-binding domain 98 141 IPR001005 -
Stsc30582g00005 543 CDD SANT 47 92 IPR001005 -
Stsc30582g00005 543 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Stsc30582g00005 543 CDD SANT 100 141 IPR001005 -
Stsc30582g00005 543 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
Stsc30582g00005 543 FunFam Transcription factor GAMYB 100 146 - -
Stsc30582g00005 543 SUPERFAMILY Homeodomain-like 43 139 IPR009057 -
Stsc30582g00005 543 SMART sant 97 145 IPR001005 -
Stsc30582g00005 543 SMART sant 44 94 IPR001005 -
Stsc30582g00005 543 FunFam MYB-related transcription factor 44 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30582g00005 Stsc-Chr30582 41897 45983 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30582g00005 26 226 MYB Transcription Factor Family AT4G26930 51.556 7.52e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30582g00005 Myb_DNA-binding 2.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30582g00005 - - ahf:112720267 548.895