Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30582g00004 ATGGAGAATATCAATAAGGATGCGGAGAAAGATGCAAACATTTTCACGACAACGAGGCGAGGCCTGGAAGACGGCAGCGGCAAAGGTGGTGGTGGGGCAACAACAATAGATGTGGCTTTGAAAAAGGGTCCTTGGACAACCACAGAGGATGCAATTCTCATTGATTATGTGACCAAGCATGGTGAAGGAAACTGGAATGTAGTACAAAGAAACGCTGGATTGGCTCGATGTGGAAAGAGTTGTAGGCTAAGATGGGCAAATCATTTGAGACCAAATTTGAAGAAAGGTGCTTTCTCTCATGAGGAAGAAAAGCTCATCATAGATTTCCATGCTCAGTTTGGCAACAAATGGGCTCGAATGGCTGCTTTGTTGCCTGGAAGAACGGATAACGAGATAAAAAATTATTGGAACACAAGGGTGAAGCGAAGGCAAAGACAAGGACTTCCTCTGTACTCAGATGACCCCAATGGCCTCACCACTACCACAACCGCACCCACTGCCGCCTCTGTAACCCATCTCGGATCAAACTTCATGAGTAATGTTCCCACAACCAATAATAAGTTCGAGTTTATACAACAGAGTTATCTTCCTTCTCCACAACACCATTCTCCTTTAGCTTCACCAATACAACATACTTCATCAACATTATCTTCACCATTGTCCTCATATGCAACATCTTCTTCACCTCTTTCATTTACTTTCCAAAGACCTGCACCATTGTTGTACAACCCTCTTACTTTTAAGCGTTACCGCTCAACCCCGAATTTCAACCTTGATAGCGGATTTGAGTTCGCTAGTCAACTCAACTCGTCTTCTTCGTTCTCTCATTTCTTTCAGAGTCCCACATCGCTGGATGATCTTGAAAGAAACGGTCTCTCTTTGGAGTTTTCTCCCTCCAATTCCAGTAATGTCCAAAGCAAGATGCAATTCCTTTCAAACCAAATAATGGAGCCGTTGGAGGTTAAGTATTATGCTGAATACAATAATGACACAAATTCTTTGAGCATGAGTAATAATAGGTTGCTTGGGGATTTTCTATTTGAAACTCAAGCATTGGATTCTAGCCATCAGATTTTAAAGAAACGAAACTACTTGGGCTTGAATGAAGGGAATAATGACGATGTGTTTGATAGCTGCCAAAACTTTGATGACTTGCCTCTTAGCTCCCTTGATTGGTCTTCTACTCCAGGACTAAAACTAAAAGAAGAAGGAAGTGACCTAAACAAATCCTTGAATGAGGACTTTTCAACATTGTTCAATGTAATGCCTTCAAGCATGCATGACCAACAAGATTTGCAGCAGAATTTTGCAACAGAAGTTTCTAATAACATCCAATCTTCTTATGTCATCATAGATGACAATTTTGGACTTGATATGTAG 1380 0.4123 MENINKDAEKDANIFTTTRRGLEDGSGKGGGGATTIDVALKKGPWTTTEDAILIDYVTKHGEGNWNVVQRNAGLARCGKSCRLRWANHLRPNLKKGAFSHEEEKLIIDFHAQFGNKWARMAALLPGRTDNEIKNYWNTRVKRRQRQGLPLYSDDPNGLTTTTTAPTAASVTHLGSNFMSNVPTTNNKFEFIQQSYLPSPQHHSPLASPIQHTSSTLSSPLSSYATSSSPLSFTFQRPAPLLYNPLTFKRYRSTPNFNLDSGFEFASQLNSSSSFSHFFQSPTSLDDLERNGLSLEFSPSNSSNVQSKMQFLSNQIMEPLEVKYYAEYNNDTNSLSMSNNRLLGDFLFETQALDSSHQILKKRNYLGLNEGNNDDVFDSCQNFDDLPLSSLDWSSTPGLKLKEEGSDLNKSLNEDFSTLFNVMPSSMHDQQDLQQNFATEVSNNIQSSYVIIDDNFGLDM 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30582g00004 459 FunFam MYB-related transcription factor 41 94 - -
Stsc30582g00004 459 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
Stsc30582g00004 459 MobiDBLite consensus disorder prediction 1 17 - -
Stsc30582g00004 459 CDD SANT 44 89 IPR001005 -
Stsc30582g00004 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 144 IPR017930 -
Stsc30582g00004 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 89 IPR017930 -
Stsc30582g00004 459 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 24 435 - -
Stsc30582g00004 459 Gene3D - 97 143 - -
Stsc30582g00004 459 Pfam Myb-like DNA-binding domain 42 89 IPR001005 -
Stsc30582g00004 459 Pfam Myb-like DNA-binding domain 95 138 IPR001005 -
Stsc30582g00004 459 SMART sant 94 142 IPR001005 -
Stsc30582g00004 459 SMART sant 41 91 IPR001005 -
Stsc30582g00004 459 MobiDBLite consensus disorder prediction 1 33 - -
Stsc30582g00004 459 SUPERFAMILY Homeodomain-like 40 136 IPR009057 -
Stsc30582g00004 459 FunFam Transcription factor GAMYB 97 143 - -
Stsc30582g00004 459 CDD SANT 97 138 IPR001005 -
Stsc30582g00004 459 MobiDBLite consensus disorder prediction 199 220 - -
Stsc30582g00004 459 Gene3D - 41 94 - -
Stsc30582g00004 459 ProSiteProfiles Myb-like domain profile. 37 89 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30582g00004 Stsc-Chr30582 29052 32697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30582g00004 39 151 MYB Transcription Factor Family AT2G32460 82.301 4.62e-66 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30582g00004 Myb_DNA-binding 5.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30582g00004 - - ahf:112723793 579.711