Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30580g00002 ATGGACTGCCAATGCATCCATGTTGTTATTGAAGGCAGAATCTCATTCAACAAGAGAAGCCTGCATGCCATTGGAGACACACCAAACCCCTATGAGAAGGCCATCTCTATTATTGGAAAGACTTTGGCTCCCTTTGATGATGATAACTTGATTCCATGTTTTGGCTTTGGTGATGCAACAACCCATGATCAAGAAGTGTTTAGCTTTCACAGTGATCATACACCTTGCCACGGTTTTGAGGAAGTTCTGGCTTGCTACCAAAAAATAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCTGTGATTGAGGCTGCAATAGACATTGTTGAGAAAAATCGCGGCCAATTCCATGTGTTGGTTATCGTTGCAGATGGCCAGGTTACTAGGAGTGTCAACACTGGAGATGGAGAACTCAGTCCTCAAGAGGAGAAGACAATCAAAGCCATAGTTGATGCAAGTGAATACCCCCTTTCAATTATTCTGGTTGGGGTTGGGGATGGTCCATGGGAAGATATGCAAAAGTTTGATGACAAGATACCGGCCCGTAGTTTCGACAATTTTCAGTTTGTTAACTTCACTGGCATAATGTCCAAAAATGTTAGCCCCGCTGAGAAAGAAGCAGCTTTTGCTCTAGCTGCTCTCATGGAGATCCCTTTCCAATACAAAGCAACCATTGAATTTGGACTACTTGGTTTGGACTACAGACGTGTAACAGGAAGAGCGAAGAAAATAGTTCCGAAGCCTCCTCCGGTTCCTTATTCCCGGCCGGCTCCTCCTCTTCATGTAATGAGCAATGCACAGGCATCCCCAGCAGATGATCGTCAACTGGCATGCCCTGTATGTCTCACCAATGCAAAGGAACTGGCTTTCGGATGTGGCCACATGACTTGCAGAGATTGTGCATCAAGGTTAAGTAATTGTCCCATATGCCGGGAGAGGATCACTAGTCGTCTCAGGGTGTTCACTGGCTGA 981 0.4536 MDCQCIHVVIEGRISFNKRSLHAIGDTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHTPCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKNRGQFHVLVIVADGQVTRSVNTGDGELSPQEEKTIKAIVDASEYPLSIILVGVGDGPWEDMQKFDDKIPARSFDNFQFVNFTGIMSKNVSPAEKEAAFALAALMEIPFQYKATIEFGLLGLDYRRVTGRAKKIVPKPPPVPYSRPAPPLHVMSNAQASPADDRQLACPVCLTNAKELAFGCGHMTCRDCASRLSNCPICRERITSRLRVFTG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30580g00002 326 SUPERFAMILY RING/U-box 277 320 - -
Stsc30580g00002 326 SMART ring_2 281 313 IPR001841 -
Stsc30580g00002 326 Pfam Copine 20 231 IPR010734 -
Stsc30580g00002 326 SUPERFAMILY vWA-like 28 178 IPR036465 -
Stsc30580g00002 326 Pfam Zinc finger, C3HC4 type (RING finger) 278 319 - -
Stsc30580g00002 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 325 IPR013083 -
Stsc30580g00002 326 Gene3D von Willebrand factor, type A domain 26 209 IPR036465 -
Stsc30580g00002 326 ProSiteProfiles Zinc finger RING-type profile. 281 314 IPR001841 -
Stsc30580g00002 326 PANTHER COPINE FAMILY PROTEIN 1 11 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30580g00002 Stsc-Chr30580 4669 16942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30580g00002 267 324 C3H Transcription Factor Family AT3G07200 36.923 6.84e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30580g00002 K16280 - gmx:100790153 531.946