Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30580g00001 ATGGGCAACCTCTTAGCCAGGAACAAAAAGAGTAGTGCTCGAATCTCGAGAAGCAATACCAAAGGAAGTGGTGGAGGAAGCAATAATAATAATATTTCTACAGCCATAGACAACAGACCTTTGTCATTATCACATTTAAGGCCACCGCAGTATCCGTCTCTGCCGCCGCCACCGCCGCCGCAACGAGCAAAATCCATGTCTAGGGCACAAAATAAATCCGGAGAGGGATCGGCAGCCATGAGAAAGAATGAAGTAGCAAAGAAATATGCTTTGATTAAGGATAACTTCACTTCACTTGAACAGGTTACAACTGCCTTAAGGAAAGAAGGTCTAGAATCATCAAATCTCATCCTTGGAATTGATTTCACAAAGAGCAATGAATGGACTGGCAGAATCTCATTCAACAAGAGAAGCCTGCATGCCATTGGAGACACACCAAACCCCTATGAGAAGGCCATCTCTATTATTGGAAAGACTTTGGCTCCCTTTGATGATGATAACTTGATTCCATGTTTTGGCTTTGGTGATGCAACAACCCATGATCAAGAAGTGTTTAGCTTTCACAGTGATCATACACCTTGCCACGGTTTTGAGGAAGTTCTGGCTTGCTACCAAAAAATAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCTGTGATTGAGGCTGCAATAGACATTGTTGAGAAAAATCGCGGCCAATTCCATGTGTTGGTTATCGTTGCAGATGGCCAGGTTACTAGGAGTGTCAACACTGGAGATGGAGAACTCAGTCCTCAAGAGGAGAAGACAATCAAAGCCATAGTTGATGCAAGTGAATACCCCCTTTCAATTATTCTGGTTGGGGTTGGGGATGGTCCATGGGAAGATATGCAAAAGTTTGATGACAAGATACCGGCCCGTAGTTTCGACAATTTTCAGTTTGTTAACTTCACTGGCATAATGTCCAAAAATGTTAGCCCCGCTGAGAAAGAAGCAGCTTTTGCTCTAGCTGCTCTCATGGAGATCCCTTTCCAATACAAAGCAACCATTGAATTTGGACTACTTGGTTTGGACTACAGACGTGTAACAGGAAGAGCGAAGAAAATAGTTCCGAAGCCTCCTCCGGTTCCTTATTCCCGGCCGGCTCCTCCTCTTCATGTAATGAGCAATGCACAGGCATCCCCAGCAGATGATCGTCAACTGGCATGCCCTGTATGTCTCACCAATGCAAAGGAACTGGCTTTCGGATGTGGCCACATGACTTGCAGAGATTGTGCATCAAGGTTAAGTAATTGTCCCATATGCCGGGAGAGGATCACTAGTCGTCTCAGGGTGTTCACTGGCTGA 1335 0.4487 MGNLLARNKKSSARISRSNTKGSGGGSNNNNISTAIDNRPLSLSHLRPPQYPSLPPPPPPQRAKSMSRAQNKSGEGSAAMRKNEVAKKYALIKDNFTSLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNKRSLHAIGDTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHTPCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKNRGQFHVLVIVADGQVTRSVNTGDGELSPQEEKTIKAIVDASEYPLSIILVGVGDGPWEDMQKFDDKIPARSFDNFQFVNFTGIMSKNVSPAEKEAAFALAALMEIPFQYKATIEFGLLGLDYRRVTGRAKKIVPKPPPVPYSRPAPPLHVMSNAQASPADDRQLACPVCLTNAKELAFGCGHMTCRDCASRLSNCPICRERITSRLRVFTG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30580g00001 444 Pfam Copine 138 349 IPR010734 -
Stsc30580g00001 444 Pfam Zinc finger, C3HC4 type (RING finger) 396 437 - -
Stsc30580g00001 444 MobiDBLite consensus disorder prediction 49 63 - -
Stsc30580g00001 444 ProSiteProfiles Zinc finger RING-type profile. 399 432 IPR001841 -
Stsc30580g00001 444 SUPERFAMILY vWA-like 114 296 IPR036465 -
Stsc30580g00001 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 443 IPR013083 -
Stsc30580g00001 444 SMART ring_2 399 431 IPR001841 -
Stsc30580g00001 444 PANTHER COPINE FAMILY PROTEIN 1 66 420 - -
Stsc30580g00001 444 SMART VWA_4 113 316 IPR002035 -
Stsc30580g00001 444 Gene3D von Willebrand factor, type A domain 114 324 IPR036465 -
Stsc30580g00001 444 MobiDBLite consensus disorder prediction 1 80 - -
Stsc30580g00001 444 SUPERFAMILY RING/U-box 395 438 - -
Stsc30580g00001 444 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30580g00001 Stsc-Chr30580 4669 16942 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30580g00001 385 442 C3H Transcription Factor Family AT3G07200 36.923 2.65e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30580g00001 K16280 - gmx:100790153 626.32