Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30576g00001 ATGGCAAATCACGGCTCAGACTATACGTATAAATATGATGTTTTTCTGTGCGGAGTCCACCGTGCGTTCATCGATCGTCTCTATAAAGCTTTGGACGGCATAGATATCAAGACCTTCAAGGAAGAATCGGCGAGTCCGGATCTTGTTGAGAAAATAATCGAAAGATCCAGAATAGCAGTGGTTCTTTTGTGTGAATTGTTCCCATTTTCCAGAAGGTGCCTGGATGAAGTTGCCAAGATCATGGAGTGTTATGAGAAGAAGAGGATGCAGGTGGTTGTGCCAATTTTCTACTACGGCGTGGGAGCTGCAGATGTACGTTGGCAGAGGAAAGGTACAGCATATGAGAAAGCCTTTTCTCAACATAAAGAGAGATTGGGAGAAAATTCGGAGAAGATCGAATCATGGCGCTCTGCTTTGCGTGGAGTATGCGGTCTCATTGGAATAGGCTGCGACCAAAACAGGAAGGAAGATGAGCTTATCAGCATGATTGTTAAAGACGTCTCTGCTGGATTGCCTCCTCCTTTGCGTTTACAAATCAAAGACGCGTTTGGATTAGATTCTCGTTTTGAGGAGGTGAAATCCCATCTAGATATAGGCAACAACAAAGCAGTTCGCATGCTAGCAATTTATGGACCTCCTGGCATTGGCAAAACCACATTTGCTGCGCATATTTTTAACAAACTTATTAGCAACGACGACCAATATGCAGCTGCAAGTTTTATTTCCAATATCAGAGATAAACCAAAAGTTGAAGATCTCCAGTCGACGTTGTTAGTTGAGATGCGCGAAAAGAGAGAAAGCAAGAAGGGTGATACAAAAGATGGAGCCCAAGAAATCAAACGCAAACTCGGTGTTAAAAAGGTTCTCTTAGTGTTGGATGATGTTGATAAGATAGAGCAGTTGAAATCGCTGGCCGGTGGGTGTGATTGGTTTGGTCCTGGTAGTAGAATTATTATAACAACAAGGCATCAAAATTTGAAGAATAGACATAGAGATCGTGATAAGATTAATACATATAAAATGAGGGAGTTAAATCCTGAAAACTCTCTCAAACTCTTTAATCAGTATGCATTTGGAAAAAGCCAACCAGCACAAAATTTTGCAAATTTTACTACGCAGGCACTAAGTATTGCAAATGGTTCTCCTTTGGCCTTAAAAGCACTAGGCACCGAACTGAAAGACGGTAGCTTAGAAGAGTGGGAAGCGAATTTGGAGAGATTTAGTAAGGATTCAAAGGCTTTCGAATTTCTTCTGAGAAAGACACAAAAATTGTTTGTTTGA 1281 0.4122 MANHGSDYTYKYDVFLCGVHRAFIDRLYKALDGIDIKTFKEESASPDLVEKIIERSRIAVVLLCELFPFSRRCLDEVAKIMECYEKKRMQVVVPIFYYGVGAADVRWQRKGTAYEKAFSQHKERLGENSEKIESWRSALRGVCGLIGIGCDQNRKEDELISMIVKDVSAGLPPPLRLQIKDAFGLDSRFEEVKSHLDIGNNKAVRMLAIYGPPGIGKTTFAAHIFNKLISNDDQYAAASFISNIRDKPKVEDLQSTLLVEMREKRESKKGDTKDGAQEIKRKLGVKKVLLVLDDVDKIEQLKSLAGGCDWFGPGSRIIITTRHQNLKNRHRDRDKINTYKMRELNPENSLKLFNQYAFGKSQPAQNFANFTTQALSIANGSPLALKALGTELKDGSLEEWEANLERFSKDSKAFEFLLRKTQKLFV 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30576g00001 426 ProSiteProfiles TIR domain profile. 10 171 IPR000157 GO:0007165
Stsc30576g00001 426 SMART AAA_5 203 342 IPR003593 GO:0016887
Stsc30576g00001 426 Pfam TIR domain 11 167 IPR000157 GO:0007165
Stsc30576g00001 426 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 145 IPR035897 -
Stsc30576g00001 426 Gene3D - 5 171 IPR035897 -
Stsc30576g00001 426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 409 IPR044974 GO:0006952
Stsc30576g00001 426 Gene3D - 174 337 IPR027417 -
Stsc30576g00001 426 Gene3D - 343 421 IPR042197 -
Stsc30576g00001 426 PRINTS Disease resistance protein signature 378 392 - -
Stsc30576g00001 426 PRINTS Disease resistance protein signature 206 221 - -
Stsc30576g00001 426 PRINTS Disease resistance protein signature 282 296 - -
Stsc30576g00001 426 Pfam NB-ARC domain 188 411 IPR002182 GO:0043531
Stsc30576g00001 426 SMART till_3 11 145 IPR000157 GO:0007165
Stsc30576g00001 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 408 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30576g00001 Stsc-Chr30576 4506 8758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30576g00001 204 392 WRKY Transcription Factor Family AT5G45050 33.862 3.01e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30576g00001 - - adu:107462955 533.872