Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30573g00005 ATGGAAGACCACTTTTCCTCTAAGGGAAAGGGAACTGGGTATTGGACACCTCCTCGCCCTCACTTCGAGGGATCAAGCATATTAGACAATAGAATGAAAAATCCGGTATCGGAGGATATGCTTAACAACCTCTCTGACCTCATGAACTTCGATACCTATGCTGGTTGGTGTAATAGTCCATCTTTGACTGGTTATAATTTAGGTCATGGGATTTCATCATTTGCCTCCATGCCGTATTCTCCACCTGACGGATTCAGTTTAGTTGAACAGGGAAATGGTCCATACTTTATGACAAAAGATTGTGTAAATTATAATGCTATGGAAACCTCCTCGGGTTTCAATGACAAAGTTGCGTTACAGCAAATGGACACCCAACTTGGGTCATCAGACAATGTAAATGATATGAATAACTTAAACCCGAAACACAAAATTAATGGCTCGCTTCAAGAATTGAGTGCTGCTGTCACGGGAAATTGCTTGGTCCCTAGACCATCTTCTTGGTCGCTTAATGAGAAAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGTGGAATATTGGCACAAGTTTGGGTACCAATGAAGCATGGAAATGAGTTCATTTTAAGCACAAGTGAGCAACCTTATTTGCTAGATCAAATGCTTGCCGGATATCGTGAAGTGTCGAGGAAGTTTACTTTTTCTACAGAAGGAAAACCGGGGTCTTTTCCAGGGCTTCCTGGGCGTGTGTTTATCTCCCATATTCCTGAATGGACATCCAATGTTGCGTACTACAATAAAAGTGAGTACCTGAGGGTGGAGCATGCCATTAGTCATGAGGTTCGTGGATCAATTGCGGTTCCCATAACTGATCAGTGCTCTGAACCACCTTGTGCTGTACTAGAAATTGTCACTACAAAGGAAAAGCCTGACTTTGACAAAGAACTAGAAATTGTTAGCAGTGCACTCCAGCTTGTTAATTTAAGGACTACTTCGCCTCCGCGACTTCTTTCCCAGTGTCTATCAAGTAACAAAAGAGCAGCTTTAACAGAGATAATCGATGTGTTACGGGCTGTGTGTCATGCGCATAGATTGCCACTGGCATTGACATGGATCCCCTGTTGTTATAGTGAGGGAATAGGAGATGAAACTTCAAGAATACGGATTAAAGACGGGCATAAAATTTCTGGTGAAAAATCTGTACTATGCATTGAAGAATCAGCTTGCTATGTAAATGATAGAGTGGTGGGAGGATTTGTTCATGCATGTGTTGAACATCATCTTGAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCAAACCATCCATTCTTCTATCCCGACGTGAAGGCATATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGCAAATATAAGTTGAATGCCGCTGTTGCAATCAGGCTAAGGAGTACATTCACAAATGATGATGATTACATATTAGAATTCTTTTTGCCTGTCAATATGAGTGGAAGTCAAGAACAGCAACTTTTATTAGACAATCTATCAGGTACTATGCAGAGAATTTGTAGGAGTTTGAGGACAGTATCGGATGCCGAAATATCTGGAATAGAAGGTTCGCAAGTGCGGTTTCAAAAGGAAAAAGTCTCGAATTATCAGAGTTTTTTCTCCCATATGGCAGTGGATATTGACCATGATTCGGTCCAGCCTATGACCTTGAGAAACAATGGAACTGAAGCTGCTCATAACCAGGCAATGAATGGATCAAGAAAGCAGATTGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCGGTAGTCTTAAGGATGCGGCAAAAAGCATCGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCAACATGGAATTTCTAGATGGCCATCACGCAAGATTAATAAAGTCAATCGTTCGTTAAAAAAAATACAAACCGTGCTTGATTCGGTCCAGGGTGTGGAAGGAGGACTGAAGTTTGATCCACACTCTGGGGGTTTTGTAGCAGGAGGATCAATCAACCAAGAAATTGATGCACATAAAAGTTTTCTCTTCCCTGAGAAATGTTCTGTAAAATATCCTGATCTGGCTGCACAAGATGCAGTCAACACATCTCCAGCATCTGGTAGCAAAGGTGAGAATTTAGCCGTTAAATCTGAAGATGATGATGATAATAATGTCTGTTTTTTGAGAAACCAGCTTCTACATACAAACATGCTTATCCCAAATTCTAATGGTGAGTTGAAGAAAGACAAGGCTTCTTCTGTTAGTGTAGATTCAAAACCAATGGCCATGGATGATGATGGATTATGCCAGGCAGGCGGTCCGGTTTCTGTTTTTGAAAATTCTAGCCTGGTTGCTGATGAGATGGAAATTCATCTGAATGGGGCTGAGAGGCCTGGCGAACATAACAATCCTACTACTTCAAGCATGACAGACTCATCGAATGGTTCTGGTTCGATTTTGCGCCCCAGCTCATCTGGCTCTCGGAGCTTTGAGAATCGGAAGCATTCCAAAGTCAAATCACCTTGTATTGATAGTGGATCGAAAATTATTGTCAAAGCTTCCTACAGAGAAGATATGATCCGTTTCAAGTTTGATCCTGAAGCTGGCTGTCTCCAGCTGTATGAAGAAGTTGCTACCAGATTCAAATTACAAAACGGATCATTCCAGCTCAAGTATCTTGATGATGAAGACGAATGGGTGATGATGGTAAATGACTCGGATTTGCAAGAATGCATAGAAATATTGGATGATCTTGGCACCCGCACTGTGAAATTTCTTGTCCGCGACATGCCTAGTGGTTTGAGCAGCCGTGGAAGTAACAGTTGCTTCTTGGCAGACAGTTTATAA 2865 0.4188 MEDHFSSKGKGTGYWTPPRPHFEGSSILDNRMKNPVSEDMLNNLSDLMNFDTYAGWCNSPSLTGYNLGHGISSFASMPYSPPDGFSLVEQGNGPYFMTKDCVNYNAMETSSGFNDKVALQQMDTQLGSSDNVNDMNNLNPKHKINGSLQELSAAVTGNCLVPRPSSWSLNEKMLRALSFFKESAGGGILAQVWVPMKHGNEFILSTSEQPYLLDQMLAGYREVSRKFTFSTEGKPGSFPGLPGRVFISHIPEWTSNVAYYNKSEYLRVEHAISHEVRGSIAVPITDQCSEPPCAVLEIVTTKEKPDFDKELEIVSSALQLVNLRTTSPPRLLSQCLSSNKRAALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIGDETSRIRIKDGHKISGEKSVLCIEESACYVNDRVVGGFVHACVEHHLEEGQGIAGKALQSNHPFFYPDVKAYNISEYPLVHHARKYKLNAAVAIRLRSTFTNDDDYILEFFLPVNMSGSQEQQLLLDNLSGTMQRICRSLRTVSDAEISGIEGSQVRFQKEKVSNYQSFFSHMAVDIDHDSVQPMTLRNNGTEAAHNQAMNGSRKQIEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPHSGGFVAGGSINQEIDAHKSFLFPEKCSVKYPDLAAQDAVNTSPASGSKGENLAVKSEDDDDNNVCFLRNQLLHTNMLIPNSNGELKKDKASSVSVDSKPMAMDDDGLCQAGGPVSVFENSSLVADEMEIHLNGAERPGEHNNPTTSSMTDSSNGSGSILRPSSSGSRSFENRKHSKVKSPCIDSGSKIIVKASYREDMIRFKFDPEAGCLQLYEEVATRFKLQNGSFQLKYLDDEDEWVMMVNDSDLQECIEILDDLGTRTVKFLVRDMPSGLSSRGSNSCFLADSL 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30573g00005 954 CDD PB1_NLP 855 935 IPR034891 -
Stsc30573g00005 954 ProSiteProfiles PB1 domain profile. 854 936 IPR000270 GO:0005515
Stsc30573g00005 954 ProSiteProfiles RWP-RK domain profile. 573 661 IPR003035 -
Stsc30573g00005 954 MobiDBLite consensus disorder prediction 801 847 - -
Stsc30573g00005 954 MobiDBLite consensus disorder prediction 706 725 - -
Stsc30573g00005 954 Pfam PB1 domain 857 935 IPR000270 GO:0005515
Stsc30573g00005 954 Gene3D - 851 934 - -
Stsc30573g00005 954 Pfam RWP-RK domain 593 641 IPR003035 -
Stsc30573g00005 954 SUPERFAMILY CAD & PB1 domains 850 938 - -
Stsc30573g00005 954 MobiDBLite consensus disorder prediction 805 833 - -
Stsc30573g00005 954 SMART PB1_new 854 936 IPR000270 GO:0005515
Stsc30573g00005 954 PANTHER PROTEIN NLP8 124 944 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30573g00005 Stsc-Chr30573 29936 35014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30573g00005 1 954 NLP Transcription Factor Family AT2G43500 49.082 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc30573g00005 PB1 1.7e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30573g00005 - - ahf:112736799 1378.23