Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30571g00006 ATGGCTTACACAGCTACTCCTCAGATTCTGTTACATAATTCCATATTAGGAAGAGGAGAAAGGTTCTTGAGAGGGACACTAACATCATCCACAACAAACACTAACATTAGTTTGCAGGTGCAGGCTTCAAAGGGCCCTGGCAACAACAAAAGAAGAGCACCCCCTTCCCCTGGAGTGGACACAAGAATCCACTGGGAAAATGAAAATGAAGGTTGGGTTGGAGGTGGTAGCAGACAACAATCCACTTCATCAGACAATAAGAACCCTAAGAATCTCTTAGGAGAATCATTTGCTGATTTGCTCAGCGCTTCCTCAGGTTCCCATTACGAATTCTTAGGAGTACCTGCGGATGCGGATTTAGAAGAAATCAAGACAGCTTACCGGAGATTATCGAAGGAGTACCATCCAGACACAACTTCTCTGCCTCTCAAAACTGCTTCAGAGAAATTCATGAAACTCAGGGAGATCTACGATGTTCTGAGCGACGAAGAGAGTCGAAGGTTCTATGACTGGACTCTTGCTCAAGAAGCTGCAAGCCGGCAAGCAGAGAAGATAAAAATGAGATTAGAGGATCCTTATGAGCAACAACTCAGAAGCTATGAACCAGTTCCAGACATGGTTGACCGTCTTGGAGGCAAGAATATGAAGCTTAGCGATCAAGCTGTCTCTGCCCTAACTATTGATGTCTTCATCATTATTTTCGCCATTTGTTGCATCGTTTATGTAATAATATTCAAAGCTCCATATTACTATTAG 756 0.4325 MAYTATPQILLHNSILGRGERFLRGTLTSSTTNTNISLQVQASKGPGNNKRRAPPSPGVDTRIHWENENEGWVGGGSRQQSTSSDNKNPKNLLGESFADLLSASSGSHYEFLGVPADADLEEIKTAYRRLSKEYHPDTTSLPLKTASEKFMKLREIYDVLSDEESRRFYDWTLAQEAASRQAEKIKMRLEDPYEQQLRSYEPVPDMVDRLGGKNMKLSDQAVSALTIDVFIIIFAICCIVYVIIFKAPYYY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30571g00006 251 Gene3D DnaJ domain 98 193 IPR036869 -
Stsc30571g00006 251 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 26 249 IPR044618 -
Stsc30571g00006 251 SUPERFAMILY Chaperone J-domain 105 175 IPR036869 -
Stsc30571g00006 251 FunFam DnaJ homolog subfamily C member 4 96 194 - -
Stsc30571g00006 251 CDD DnaJ 108 162 IPR001623 -
Stsc30571g00006 251 PRINTS DnaJ domain signature 145 165 IPR001623 -
Stsc30571g00006 251 PRINTS DnaJ domain signature 109 127 IPR001623 -
Stsc30571g00006 251 PRINTS DnaJ domain signature 127 142 IPR001623 -
Stsc30571g00006 251 ProSiteProfiles dnaJ domain profile. 107 173 IPR001623 -
Stsc30571g00006 251 SMART dnaj_3 106 165 IPR001623 -
Stsc30571g00006 251 MobiDBLite consensus disorder prediction 73 91 - -
Stsc30571g00006 251 Pfam DnaJ domain 108 170 IPR001623 -
Stsc30571g00006 251 MobiDBLite consensus disorder prediction 40 91 - -
Stsc30571g00006 251 ProSitePatterns Nt-dnaJ domain signature. 150 169 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30571g00006 Stsc-Chr30571 32565 33636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30571g00006 108 175 C2H2 Transcription Factor Family AT1G74250 37.500 4.19e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30571g00006 K23051 - qsa:O6P43_001846 314.694