Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30568g00003 ATGGCACCAGTTTCATTGCCCCCAGGTTTCAGGTTCCACCCAACAGACGAAGAACTTGTTGCTTATTACCTCAAAAGGAAGATCAATGGGCGTAAGATTGAGTTGGAGATCATTGCTGAAGTTGATCTCTACAAGTGTGAACCGTGGGACTTGCCAGGGAAGTCATTGTTACCGGGAAAGGATTTGGAGTGGTATTTCTTTAGCCCAAGAGATAGGAAGTATCCAAACGGGTCAAGAACGAACCGTGCAACAAAATCTGGGTATTGGAAGGCAACAGGGAAGGATCGTAAAGTAAATTCACAATCACGTTCTGTGGGTATGAAGAAAACCCTTGTTTACTATCGTGGAAGAGCTCCTCATGGCTCTCGCACTGATTGGGTTATGCATGAATATCGTCTTGATGACGCAGAATGTGAAAATGCTTCTTCAGGCTTGCAGGATGCATATGCACTTTGCCGTGTGTTCAAGAAGAGTGCAGTGATAACCCCTAAAGTTGATGAAGAACATCATCATCATCACTATGTGAATACTAATAATAATAGCAGCCATGCTTTGCCAATTACAAGCGATCAATCATCAAGTATGGAGTTATACTCTGAAGGAAGGGGTGAAGATTTGGATAATAGCTCTAATAATTATTATGTTCCCATTGATACAACTTGCACTATACCCCTCAACAACATGGTGATGAACAATAATAATAGTAGTGATGCTTCTTTCAATAGTAGGGATCATGGGAAATGGTCACAATTTGTTTCAGAAGATCCATTGTTCAGCTTTCCAACTTCCTCAGTTGCTAATAATTATGGATCTATATCATACCCTCCATCCAAGGTGGATATAGCACTGGAGTGTGCAAGGATGCAACATAGGTTCACCATGCCTCCATTGGAGGTAGAGGACTTCCCTCATGTTGGAACCTCCGACTCCGAGCTGAAGATGACACAATTACCCTCGGGTGCTGCCGCCGCCGCGCACGGAACTCGTAGCGAAACAGATATCTTGCAGGAAATTCTTTCCGTTGCTCATGCTTCTCAGGAGTTGATAAACCACTCCAGCTACTCATCATCATCATGGGGTGGTGGTGGTGGTGGCAACCACGAAAATAGTGCAACTCGTGGAGATGATGATTTCACTTTCATGGTTGGTAGCACTAATAACTACAACAATAATTTGAATGACATTAACTCCATGAGGTATGTTGATAGAAACTGGGAAGATCCAAACAACACTACAAGATCCATAGATATTGGATATTTGGATGAAGAATTTAAGGGAGAGAGGATGGTAGAGAATTTAAGATGGATTGGAATGTCAACAAAAGATTTAGAAAAGATTGTTCCAATAGAGGATATATCAAGCTTCCAGACAAATAATAGAGAAGAAAATGAGGTGCAAGAAGAATCTGAACAATACAATAGCAACAAGGAACTAATCATGAATGGCACTGCCATCAATGATTTCTCATTAGCGTTCATCAATGATGATGATGATGACCCGAACCCTAATAACAACAGCGATGAGAATTTTCTAGAAGATGGTCATAACAACATAGATAATGATGATTACTCAAGTTCTCCAAGCTTTGAAGTTGTTGAGGAAATAAGGGTCAGCCATGGATCAATGTTTGTTTCAACTCGCCGCGTCGCAGACACGTTCTTCCACCAAATAGTTCCTTCACAAACCGTCCAAGTTCACCTCAATCCAGTGATAACAAACAATAATGAAGAGACACTGATGATGATAATGGAGAGGAATGATAATCAAGGGTATTTTAATATGATGGGGAAGCTAATAATGAAGCCTTCAAAGATAATAGCAACTGCAATTGTGTTCGTCTTTGCACTTCTATTCATGCATTGCGCTTATTTGAAGGAAGAAGTGGAAATGATGAAGAAGAGAAAGAGATCTCAATCATCCGAGATAATCACATGGAACAACAATAATAAGGTTTGTTTTGTTGGTTTCAAGAGTAGTGAGAAAGGCTTTGGTGCCATTTTGAAGAAAATAGGAATTTTTCTCACAATCTCTCTGGCTCTTTGTACCATATGGGCTAACCATGTTATAGTTAACCCTTGA 2079 0.4045 MAPVSLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIAEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSRSVGMKKTLVYYRGRAPHGSRTDWVMHEYRLDDAECENASSGLQDAYALCRVFKKSAVITPKVDEEHHHHHYVNTNNNSSHALPITSDQSSSMELYSEGRGEDLDNSSNNYYVPIDTTCTIPLNNMVMNNNNSSDASFNSRDHGKWSQFVSEDPLFSFPTSSVANNYGSISYPPSKVDIALECARMQHRFTMPPLEVEDFPHVGTSDSELKMTQLPSGAAAAAHGTRSETDILQEILSVAHASQELINHSSYSSSSWGGGGGGNHENSATRGDDDFTFMVGSTNNYNNNLNDINSMRYVDRNWEDPNNTTRSIDIGYLDEEFKGERMVENLRWIGMSTKDLEKIVPIEDISSFQTNNREENEVQEESEQYNSNKELIMNGTAINDFSLAFINDDDDDPNPNNNSDENFLEDGHNNIDNDDYSSSPSFEVVEEIRVSHGSMFVSTRRVADTFFHQIVPSQTVQVHLNPVITNNNEETLMMIMERNDNQGYFNMMGKLIMKPSKIIATAIVFVFALLFMHCAYLKEEVEMMKKRKRSQSSEIITWNNNNKVCFVGFKSSEKGFGAILKKIGIFLTISLALCTIWANHVIVNP 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30568g00003 692 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Stsc30568g00003 692 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Stsc30568g00003 692 MobiDBLite consensus disorder prediction 177 204 - -
Stsc30568g00003 692 MobiDBLite consensus disorder prediction 174 204 - -
Stsc30568g00003 692 FunFam Nac domain-containing protein 86 15 160 - -
Stsc30568g00003 692 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Stsc30568g00003 692 Coils Coil 458 478 - -
Stsc30568g00003 692 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 212 - -
Stsc30568g00003 692 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Stsc30568g00003 692 MobiDBLite consensus disorder prediction 353 376 - -
Stsc30568g00003 692 MobiDBLite consensus disorder prediction 491 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30568g00003 Stsc-Chr30568 20259 25380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30568g00003 1 683 NAC Transcription Factor Family AT1G65910 43.194 3.81e-165 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc30568g00003 NAM 8.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30568g00003 - - gmx:100809019 781.556