Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30566g00003 ATGGGTAGAGGGAGAGTTGAACTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTTACTTTCTCAAAAAGAAGGAATGGTTTGCTCAAGAAAGCTTATGAGCTCTCAGTGCTCTGTGATGCTGAGGTTGCCCTTATCATTTTCTCAAGCCGTGGCAAGCTCTATGAATTTGGAAGTGCTGGCATCAACAAAACTATTGAACGATACCAACGCTGCTCTTTTACTCCTCAAGATGAGCATGTTGAATGTGAAACTCAGAGCTGGTACCAGGAGGTATCAAAGCTAAAGGCAAAGTATGAGTCTCTACAAAGGACTCAGAGGCACTTGCTTGGGGAGGATCTTGGACCACTGAGCATAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGGTGCTTTGGCACAGGCCAGGCAGAGAAAGACACAAATTATGATTGAACAAATGGAAGAGCTGCGTAGGAGGGAGCGCCATCTTGGAGATATGAATAAGCAACTTAGGCTCAAGCTTGAGGCAGAAGGGTTCAATCTAAAAGCTATGGAAAGCTTGTGGAGTTCCACTTCAGCTGCTACAAACAGCAACTTTACCTTTCAGCCTTCTCAAACCAACCCCATGGATTGCCAACCTGAGCCTTTCTTGCAAATAGGGTACCATCACTATGTTCAACCTGAAGCATCTAATAGTGTTGCTAAGAACATGGCTTGTGAGACCAACTTCATGCAAGGATGGGTCCTTTAA 735 0.4476 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTIERYQRCSFTPQDEHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLEAEGFNLKAMESLWSSTSAATNSNFTFQPSQTNPMDCQPEPFLQIGYHHYVQPEASNSVAKNMACETNFMQGWVL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30566g00003 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc30566g00003 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc30566g00003 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc30566g00003 244 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30566g00003 244 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Stsc30566g00003 244 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Stsc30566g00003 244 Coils Coil 148 168 - -
Stsc30566g00003 244 FunFam MADS-box transcription factor 1 13 87 - -
Stsc30566g00003 244 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Stsc30566g00003 244 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30566g00003 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc30566g00003 244 Coils Coil 119 142 - -
Stsc30566g00003 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc30566g00003 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc30566g00003 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc30566g00003 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30566g00003 Stsc-Chr30566 21324 27202 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30566g00003 1 244 MADS-box Gene Family AT2G45650 65.476 1.59e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc30566g00003 K-box 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30566g00003 K09264 - gmx:100810549 422.55