Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30566g00001 ATGGTTCGAGGGAAGACTCAGATGAGGCGCATAGAAAACGCGACAAGCAGGCAAGTGACGTTCTCAAAGAGGCGAAATGGTTTGCTTAAGAAAGCATTTGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTCCAAGAGGCAAGCTTTATGAATTTGCAAGCTCAAGCATGCAGGAGACAATTGAAAGATATCGCAAGCATACAAAGGATACACCAGCAGCAGCCAAATCAGCTGAAGAGAATGTGCAGAATTTGAAGCAAGAAGCAGCAATCTTGATGAAAAAGATTGAAATTCTTGAAGCCGCAAAAAGGAAATTCTTGGGAGAAGGTGTAGGGTCATGTAGTCTTGAAGAACTGCAACAGATAGAACAACAGTTGGAGAAGAGTGTAATCACTGTTAGAGCAAGAAAGTCTCAAGTTTTCAAGGAACAAATTGAACAACTAAAAGAAAAGGAAAAAGCCCTAGTTGCTGAAAATGCCATACTCTCTAACAAGTGTGGTATGGTTCGAAATCTAGCAACAAGTAAAACAAATAATAAGGATAAGGATCATCAGAGAGAGAATCATCAGGCTCAACACTATCCAGAAAGTAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGACTTCCTGAAACGAGAACAAGGCTACAAATTAATTGA 684 0.4006 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRKHTKDTPAAAKSAEENVQNLKQEAAILMKKIEILEAAKRKFLGEGVGSCSLEELQQIEQQLEKSVITVRARKSQVFKEQIEQLKEKEKALVAENAILSNKCGMVRNLATSKTNNKDKDHQRENHQAQHYPESSSPSSDVETELFIGLPETRTRLQIN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30566g00001 227 Coils Coil 121 141 - -
Stsc30566g00001 227 MobiDBLite consensus disorder prediction 182 196 - -
Stsc30566g00001 227 FunFam MADS-box protein SOC1 14 95 - -
Stsc30566g00001 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc30566g00001 227 Coils Coil 80 107 - -
Stsc30566g00001 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc30566g00001 227 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30566g00001 227 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Stsc30566g00001 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30566g00001 227 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Stsc30566g00001 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc30566g00001 227 Coils Coil 143 170 - -
Stsc30566g00001 227 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Stsc30566g00001 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc30566g00001 227 MobiDBLite consensus disorder prediction 182 210 - -
Stsc30566g00001 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc30566g00001 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc30566g00001 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc30566g00001 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30566g00001 Stsc-Chr30566 9919 18493 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30566g00001 1 158 MADS-box Gene Family AT2G45660 79.114 9.43e-88 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc30566g00001 K-box 4.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30566g00001 - - adu:107475751 340.502