Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30565g00005 ATGCAAACACAAAACAAGTCACCACCCGAATCGCCCTCTAACTCACTGAGCCAACTCGCTCAGAGCATGTTCCCAACCTCCAACAACAACAACAAAAGCAACACCATCATGCTTGCAGCCATTGTTTCTCTTCTCCTTGTAATCCTCTTCGTCCTTCTTCTCCACCTCTACGCCAAATGCTTCCTCTCTCATCATCATTCCCCCCAACCACCCCAACAACCTCCCCACCGTCGCCGTCGCCGCCGTGCAACTCTCACCGCCTTTCAAGGTCCACCCCAGTTCCAGTTCCACCACTTCCGCATAGAAGATTCGCCCTTTGCAACGAAAGGACTCGATTCCGCTACGGTTTCGGCGATTCCCATGTTTGTGTACCAAGAACAGAAGCAGAAAAAAACAGAGCAAGAAGAAGAAACAGAGGAGTTAGAATGTGTGATTTGTTTGAGCGGTTTTGAAGAAGGTGAAGTTGGAAGAACGTTGCCAAAGTGTGGACACGCTTTTCACGTGGAATGCATTGATATGTGGCTAAGTTCTCATTGCAATTGTCCAATTTGTAGAGCTCCCGTTCTTGCTCTTCATCAACCGAATGATTATGATGAAGATCGTGGTGGTGTGGTTGAGATTGTTATTGGTACTCCCAGTTATGATATTAGTGAGAGTGAGAATGGGAATGATGATGATAATGATAATAATTCAGTTTCAGTTTCAGTTTCAGTTTCAGGTTCTGAAACTTCATATTCTTCTTCTTCCTCTTCGTCTTTGTTGTTGGGGTGTTCTTTGAAGAGAATGCTCAGAAAG 795 0.4528 MQTQNKSPPESPSNSLSQLAQSMFPTSNNNNKSNTIMLAAIVSLLLVILFVLLLHLYAKCFLSHHHSPQPPQQPPHRRRRRRATLTAFQGPPQFQFHHFRIEDSPFATKGLDSATVSAIPMFVYQEQKQKKTEQEEETEELECVICLSGFEEGEVGRTLPKCGHAFHVECIDMWLSSHCNCPICRAPVLALHQPNDYDEDRGGVVEIVIGTPSYDISESENGNDDDNDNNSVSVSVSVSGSETSYSSSSSSSLLLGCSLKRMLRK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30565g00005 265 CDD RING-H2_EL5-like 142 185 - -
Stsc30565g00005 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 189 IPR013083 -
Stsc30565g00005 265 SMART ring_2 143 184 IPR001841 -
Stsc30565g00005 265 Pfam Ring finger domain 142 185 IPR001841 -
Stsc30565g00005 265 SUPERFAMILY RING/U-box 121 191 - -
Stsc30565g00005 265 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Stsc30565g00005 265 FunFam RING-H2 finger protein ATL1 98 190 - -
Stsc30565g00005 265 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 27 190 IPR044675 -
Stsc30565g00005 265 Coils Coil 124 144 - -
Stsc30565g00005 265 MobiDBLite consensus disorder prediction 215 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30565g00005 Stsc-Chr30565 46697 47524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30565g00005 24 191 Rapid Response to Elicitors AT3G16720 38.095 3.16e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30565g00005 - - gmx:100777829 191.045