Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30564g00005 ATGTTGGTGGATGTGGCGAGTGCTTTGGTCTCTGCCTCCCTGCAAGTCTTGATTGATAGGTTAGCTTCTCCTCAACTCCTGTCCTTCTTTCGATCCACGACCTTTGATGCTGCCGAGGATTTGAAGCTGCAGCTGCTGGCAGTGAATTCTGTCCTCGGTGATGCCGAGGAGAAGCAGATCATCAACCCATACGTGAAGAAATGGCTCAACGAGCTACGAGAAGCTCTCTACCATGCGGAGGATGTTCTCGATGAGCTTGACACTCAGGTTTTGCAATACAAGGTGAGGTCTCAGTCACACACCACCTTGGGCACTGTAATGGACTACTTTGATTCTGTTTCTCCTTTAGCTAAATCGTTGAATCGTAGACTTGAGAAAATAAATCGTAGGATTCATATTTTGAGAGACTACAAAAATCGTTTGGGCCTTAGGGAAGTCCCACAGAATCTGTTTCCTCTGCTACTGAATGTGCCTACTACTAGAAGGGTAGAGCAGTCTAAGGTTTATGGCAGGAACACTGAAAAAGAAAGAATCAAACAGCGTATACTTGGAGTCATGTATGAGGGGGAACCAATTTCTGTTGTGGCAATTGTTGGGATGGCTGGGGTTGGCAAAACTACTCTGTCTCAGCTTTTGTTCAGTGATGAACATGTGGCAGCAAGCTTCGATTTGCGGTCTTGGGTTTATGTCTCTGAGGGGTCTGATGTTCTCTACTTAACCACCAAGGTTTATGAGTCATTGACGGCTTCTAATGGCGGTAGTACAAGCTTGGACATACTTCAAGACCAACTAGCATCTTTGTTGCAAGGAAAGAGGTTCTTGTTGGTTTTAGATGATTTTTGGGCTGAGAGTTTCTTTGATTGGGAACTCTTCAAGATGGCCTTTATGGGTGCTGGTGGTGGAAGTGTTATTCTAGTCACCACCCGCAATGAAAATGTTGCAATCACTATGCACGCTGCTGTTCATTTCCTTTCGATTCTACCGGATGATGATTGCTGGAACATCTTTGCTCATTATGCATTTGGGAATAGAAATCCAGAGCCAACTTTGATGGAGATTGGTCACAGGACAGTTAGAAAGTGCAAGGGTCTTCCTTTAGCTGCAAAAGTACTTGGGAGTGTTTTACACTCAGTGATAGATGCTGAAGAATGGAATAACATATTGCAAAGTAAGATGTGGGATTTGCCGGCCAATCGGAGTAACATATTGCCTGCATTAAGATTAAGCTATCAACTCCTTCCTTCACATTTGAAGGCCTGTTTTGCTTACTGCTCAATATTTCCTAAGGGATATGAAATTAATAAGTTGGACTTGATCCATTTATGGATGGCTGAGGGTCTTCTACTACCATCAAAGGCTAAAACAATGCAGATGGTAGGTGAGGAGTATTTGGGTGAGCTTTTGTCAAGGTCATTGCTACAACGATCAACAAATAATGATTCGTTCCTTATCATGCATGACCTCATAAGCAACTTAGCACAATATGTTGGGGGCGAATTTTTTTATCTTTTGGAGGATGATAATGCTGAGCAAATTCCGGAGAAAGTTCGCCATATCTCCTTCTTGCAAGATAAGCTAGATGCACCAGACAAATTTGAAGCCTTCTATGATCATTCACAGTTGAGAACCTTCATACCATTCAAACTCTCAAGACAATTTGGTTTATTTGCTGATGCAGTTTTCGGTAGCTTGATACCAAGATTCATTTGTGTTCGCGTGCTTTCTTTGTCAAGTTACTTACTCACTACATTGCCTGATACAATTGGAAACTTGAAACACTTGCGTTATTTGAATCTTTCTTACACAAATATTCAGCAATTACCAGAATCTATAGGCCTTCTGTACAATCTGCAGATATTGTTGCTTTCAAATTGTTTTCGTCTCACTAGTTTGCCTGAAAGTCTGGAGAATTTGATTCACTTACACCATCTTGATATCATCGGTGTCCCTTTGGCAAAGATGCCACAAAACTTTGGCAAATTGAAGCTTCTTCAAAATCTTTCTATCTTTGTTGTCACCAGAAACACAGGATCAAGGATTAGTGAGTTAGGGGCTCTACTGCAACTTCATGGCTCACTTTCAATTGTGAACTTGCAGAACGTTGTTGATGCCGCAGATTCATTTGGGGCCAACTTGATGGGTAAAAAATTCCTTGACGAGTTAGTATTGAAATGGACAGCTGCTATCCATGACTTACAAATTGAAGCAGCTGTTCTTGAAAATCTTGAGCCACATGAAAACTTGAAAAGGCTGAATATTGAAAACTATGGTGGTTCAGCATTTCCAGGTTGGTTGGGAAATCCTTTGTTCTCTAACATGGTGTCTATACATCTAACTGGTTGCATCAACTGCTTGAATTTGCCACCACTTGGGCAATTATCCTCTCTCAAGACTCTGCTCATAGCAAACATGACAAGCCTAGAAAGAGTTGGTCCTGAGTTCTATGGAAATACGAATTCACCTTTTCGAGCCCTTCAAATGTTGACTTTTGAGGACATGCTTCTCTGGGAAGAGTGGTTGCCAACTGAGTTTGAAGAATTCCCTTCCCTTCAAGAGCTTCACATAAAGAGATGTCCATTATTGACCGGTAACTTGCCCCAACAATTGAGTTCCACATTTGAGAGAACTAGGCTAGCTGATTGCGATGTGTTGGTGATCTTGCCGGAGGAAATGATGCAAGGAAATACAGCTCTAAGAAGGGTAACCATATGCAACTGTCCCTTGCTTCAATCTTTTCCTTCACTTGGCCTTCTTCCACGGTTAAGGTCACTTCACGTAAGCCACTGCAGGAATTTAGAGTTTTTTCCACTGGAACAAGCTCCACACAATTACCAAGCATTGGAGAAGTTGCACTTGGAAAGCAGCTGTGAGACTCTGATTTCGTTTCCATTGTCTTCCTTCGTGGCTCTCAGTGATCTCCACATCCAAGACTGTCTCAATCTACAATCTCTTCAGAGGCTGGCAGATGGGGAACTGCCCTCTCTGGAAAGCATAAGGTTAAAGGATTGCCCAAACATGATGTCTTTCCCGGAAGGAGGGTTGCCTACTCCTAACCTTGGATCTATTTCAATTAGCAACTGTCCGAACCTGTCACCCGAAGCAGAGTGGGGTCTTCATGGCTTGGCATGTCTCAAGTTGTTCAGCATTGAAGGCGAAGTGATTGGTTTAGATTCATTTCCAGATGAAGGGGTGCTTCCAGCTTGCTTGAATTCTCTTCACATCAGTGGACTTGTGAACCTTACAACTCTCAATCATGGTGGTCTTCAGCACCTTGAATCCCTCAATCTTCTGGAGATTACTGGTTGTAACATGCTGCAATCTCTACCTGCAGAGGGTCTTCCTAATTCATTGACTTGTCTGATTATCATGGATTGCCCACTGCTTGCTCCTCTGTGTGAAGAGGGGACGGGAGAGCAATGGCCTCTCATTTCTCACATCCCCAACATAATTATTTACTGA 3459 0.4284 MLVDVASALVSASLQVLIDRLASPQLLSFFRSTTFDAAEDLKLQLLAVNSVLGDAEEKQIINPYVKKWLNELREALYHAEDVLDELDTQVLQYKVRSQSHTTLGTVMDYFDSVSPLAKSLNRRLEKINRRIHILRDYKNRLGLREVPQNLFPLLLNVPTTRRVEQSKVYGRNTEKERIKQRILGVMYEGEPISVVAIVGMAGVGKTTLSQLLFSDEHVAASFDLRSWVYVSEGSDVLYLTTKVYESLTASNGGSTSLDILQDQLASLLQGKRFLLVLDDFWAESFFDWELFKMAFMGAGGGSVILVTTRNENVAITMHAAVHFLSILPDDDCWNIFAHYAFGNRNPEPTLMEIGHRTVRKCKGLPLAAKVLGSVLHSVIDAEEWNNILQSKMWDLPANRSNILPALRLSYQLLPSHLKACFAYCSIFPKGYEINKLDLIHLWMAEGLLLPSKAKTMQMVGEEYLGELLSRSLLQRSTNNDSFLIMHDLISNLAQYVGGEFFYLLEDDNAEQIPEKVRHISFLQDKLDAPDKFEAFYDHSQLRTFIPFKLSRQFGLFADAVFGSLIPRFICVRVLSLSSYLLTTLPDTIGNLKHLRYLNLSYTNIQQLPESIGLLYNLQILLLSNCFRLTSLPESLENLIHLHHLDIIGVPLAKMPQNFGKLKLLQNLSIFVVTRNTGSRISELGALLQLHGSLSIVNLQNVVDAADSFGANLMGKKFLDELVLKWTAAIHDLQIEAAVLENLEPHENLKRLNIENYGGSAFPGWLGNPLFSNMVSIHLTGCINCLNLPPLGQLSSLKTLLIANMTSLERVGPEFYGNTNSPFRALQMLTFEDMLLWEEWLPTEFEEFPSLQELHIKRCPLLTGNLPQQLSSTFERTRLADCDVLVILPEEMMQGNTALRRVTICNCPLLQSFPSLGLLPRLRSLHVSHCRNLEFFPLEQAPHNYQALEKLHLESSCETLISFPLSSFVALSDLHIQDCLNLQSLQRLADGELPSLESIRLKDCPNMMSFPEGGLPTPNLGSISISNCPNLSPEAEWGLHGLACLKLFSIEGEVIGLDSFPDEGVLPACLNSLHISGLVNLTTLNHGGLQHLESLNLLEITGCNMLQSLPAEGLPNSLTCLIIMDCPLLAPLCEEGTGEQWPLISHIPNIIIY 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30564g00005 1152 Coils Coil 69 89 - -
Stsc30564g00005 1152 Coils Coil 117 137 - -
Stsc30564g00005 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 424 IPR027417 -
Stsc30564g00005 1152 Gene3D Ribonuclease Inhibitor 875 941 IPR032675 -
Stsc30564g00005 1152 ProSiteProfiles Leucine-rich repeat profile. 593 614 IPR001611 GO:0005515
Stsc30564g00005 1152 Pfam NB-ARC domain 178 410 IPR002182 GO:0043531
Stsc30564g00005 1152 PRINTS Disease resistance protein signature 194 209 - -
Stsc30564g00005 1152 PRINTS Disease resistance protein signature 916 932 - -
Stsc30564g00005 1152 PRINTS Disease resistance protein signature 361 375 - -
Stsc30564g00005 1152 PRINTS Disease resistance protein signature 267 281 - -
Stsc30564g00005 1152 FunFam Probable disease resistance protein At1g63360 410 495 - -
Stsc30564g00005 1152 Gene3D - 327 408 IPR042197 -
Stsc30564g00005 1152 Gene3D - 155 325 IPR027417 -
Stsc30564g00005 1152 SUPERFAMILY L domain-like 884 1140 - -
Stsc30564g00005 1152 Gene3D Ribonuclease Inhibitor 557 874 IPR032675 -
Stsc30564g00005 1152 SUPERFAMILY L domain-like 485 870 - -
Stsc30564g00005 1152 Gene3D Ribonuclease Inhibitor 942 1139 IPR032675 -
Stsc30564g00005 1152 PANTHER DISEASE RESISTANCE PROTEIN RP 49 855 IPR044974 GO:0006952
Stsc30564g00005 1152 Gene3D - 409 495 IPR036388 -
Stsc30564g00005 1152 Gene3D - 27 127 - -
Stsc30564g00005 1152 Pfam Rx N-terminal domain 9 99 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30564g00005 Stsc-Chr30564 27358 30875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30564g00005 192 663 WRKY Transcription Factor Family AT5G45050 24.399 3.61e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30564g00005 - - ahf:112772775 1229.16