LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30564g00004	ATGGGGAGGGGCAAGAAACTACTGTCTTCTTTACCTCGGGAGATGCTGAGCCTGCTCCACAATCCAAATATCCAGTTCAGGGTCAAACTCAGTAAACTGTCTTTGATGCGTCAGTCCTTGCTGACCCTTGTTGCTGTCGCCGACGACGCGGAAGCCAAGCATCTTCCCCTAGCCGGATCTGCCAGCTGTAACGTGGCGGAGTGGCTGCATCACTTCCATGATGTGATGCACCGTTTGTTCAAGGTGCTGCTGGATCCCGCAAATCATGATGCTGAACATGCTTTGGACTTACAGTTCATACTCCAAGAATTCGAAATCATAACAAAGCGGAAGCATCTTCTTCTTCTGACCAAGAAATTACAAGGTGAGCAAGATCAAGAGAAACCGGAAGGTTCTTCGTATCTTAAGGCTAATGTTTACGGAAGAGAGAAAGAAAAGAATGAGATGGTTGACTATTTGCTATCTGATCGATCCAGTGGAAGTGTTGGCAACACTTGTGTGATTGCCATCGTAGGCGTGGGAGGGATCGGTAAGACCACTCTTGCTGAAATTGTCTACCACGACGAACGAGTCAAGGCTTCGTTCGAACTCCGAGGCTGGGTGGATTATCAAGAGGGTGTTGATGCTGTGAGTTTGGGGAAGATTGCTCTTGATAGTTTCGACGAGGATTTCCTTCGTTCAGATGGTTTAACGGAGGTGATTAGTCGTCTAAGGAAGTGCTTGTTCGGGAAGAAGTTTTTGCTGGTGCTGGACGGAATTCAGAGTCCTACATGCTGGAAAACCCTTCAGACATGTTTTGCTGATGCTGCTGTTGGAAGTGTTGTCATCTTAACCACATCAAAGCTAGAGGCTGCCTTAGAGGTGCGTTCCGATCTCGTTCTACATCTGGGTTTGTTATCGCCGGAAGACTCATGTTCATTGTTTTTGGATCATGCTTTTGGAGATGGAAACCCAAATGCAAATCTTGAATTTGCGCCCGTGACTAAGCAACTTGTGAGAAAAATTGGAGGGCTGCCTATTGCTGTCAAGAAACTTGCTAGTGTCTTGTATGACTACCCAGACTTGCAAGCATGGAAAGAGCTGCTCAAGTTTAATCGATCACATTTGTTAGACTTGAGTGAGTTGAGTCTCCCCATTCAGTTTTCAGAACGCCGTCTATACAACTTCCGCAATATGGTTCGTCTCGAAATAGTAGGCGTTAGGAGGCTAAAGCTGCCGGGTGAGTTTGCAGAGCTAAGATGTCTTGAGTACCTTGACCTCTCTTTCTGTGGCTTATGGAGATGGCCAAATTCGATGAGTCTCCTGACTCGTCTGCACACTTTAAAGCTGTCCTTCTGGAACTATGTTCGTCCACAAAGTGTTTTTTTGTATTTTCCCAACTTAAATTATCTGGATATAAGAGCCAACAGTAACCCTGCAACAGGAATGCTTATAGATGTGGGGGCAATGAAAAACCTCCAAACGCTAATTGGTTTCACAGTGAACAAGGATTCTGGATCTAATTTGGAAGAGTTGGCGAGTCTTCCGAGTATCAGAACACTGAGCATTACAGAGTTGCAAAATATGGTGGATGCAACCTATGCCTTAAAAGCAAATTTGATAAGAAAAAGGCATCTAGAAAATCTTACTTTGCGATGGAATCAGTTGCGTGTTCCTGAATTAGAACAAGCACCAGAGTATTTGCAGCCAACAGGGCAACCCAAAATGCTTGATATATGCGAAAGAGCATTAGAGTATTTAGAACCTCCAGAACAGCTGAAAATGCTTGAAATTTTGGGCTGTCCAGTTAGAAGATTTCCAGATTGGTTGGGGGATTTGTCATTCGGGATGCTAGAGGTCCTACATCTTCGTGACTGTAGAAATTGCCCTTTCTTGCCACCGCTTGGACAACTCTCATCTCTTAAAGAGCTATCTATTCAAGGGTGTGACAATGTAAGATCAGTAGGAAATGAGTTCTATGGGCAGTGTACTTCATATGTACCATTCAAGTCTTTGGAGGTCTTGTGGTTTGTAGACATGGCAAACTGGAAAGAATGGATTCTTTTAGATGATGAAAGGCTTCATTTTCCTCGCCTCCGTGAGCTTTACTTGATACATTGCCCAAAGTTGCAGCAAGGCTTGCCCAAGAATCTTCCTTCTCTCAAAAAGATTGAAATAATTCATTGTGATTGTCTTGTGGCTCCCCTACCAAAGATACCTGACAACCATGAATCAGTGATACAAGAAAAGGAAAAGGAAAAGGACTGTGCTGATATTATTGCTACAAGTGCTGGGGAACATGAAGAATTTGATTTCGTAATGGATCCTATTATTAATAGAAAAGTTGATGAACCAGTAGTGGATGATGATAAGGATGATAGAAATGATGAATGCATGCTAGATTTTGGGTACTCTTTTGATATTGTGAAAGTTGCTGATGCATCAGAGCTATGCAATTTGCCAGATGGATTAAAAAGCCTTAGGATTGAAGGTTGCCAGTTTCTTGAGTCCCTACCTCAGTTTTTGAACAATTATCCGGATATCTTCGAGTTGTTTCTTGTTGATTGTTGCTCTCTTAAGCGCTTTGCCGATGTTCTACACCCTAAGTCTTTGAGAACACTTCATATTCGCAAATGTCCGGTTTTAGAGTTCATCATTCCTCTTGGAGTACACAAGGATTTTAAACTCTTGAAACATCTTTTTATTAGTAGCAGCTGTGAATCTCTTACCTCCATCTCCATAAACCTTTTCCCAAGACTCCAAACTCTCTATATCAAGGATTGCCCCAATCTCAAGTCGCTTTCAGTGGCTACGGGACTTCGTGACCAAAATCTGAAACTTGAAAGTTTGAAGTCTTTGCCCAATCGTTTCTCAACTCTTACATCACTTCAGTCATTGCTTATAGACAAATGTCCGTTACTTGAGTCTTTACCAGATGGGGGTTTGCCATCCAGTTTGAGTTTAATTTCTATTGCTTTCTGTTACAAACTTACACCACAGAAGGAGTGGAAGTTGAATACACTTTCCTCGTTAACTTGTTTCGAGGTTGAAGGTGGGTGCATTGGCATGAAATCATTTCCAGACAAGGATCTTCTACCTAGAAATCTCAAGTCTCTGCGCATCAGCAAACTCTCAAGTCTGAGAGTCTTGAATGGCACGGGGCTTCAGCATTTGACTGCTCTTGAGACATTGGAGATTAACTGCTGCCCCGGACTCATCTCCTTGCCAGAAGGATTGCCATCATCCTTGACTTGTCTTTGCATCAAAGAATCCTCAATATTGACCCACAAACTCTCCTATAAAGCAGGTACAGAGCGGGTCAAGGTAGCCCATATCCCCAACTTACAAATTGATGAGGATGCAGGTCATGGAGTTAACAAAGAAACAATAATTCCCAGGAAGGAAGTTGAGGCTGCTTCACTGAGTTTTAAACAGCCACAAAGAAAGAGAGGGTTCTGA	3438	0.4305	MGRGKKLLSSLPREMLSLLHNPNIQFRVKLSKLSLMRQSLLTLVAVADDAEAKHLPLAGSASCNVAEWLHHFHDVMHRLFKVLLDPANHDAEHALDLQFILQEFEIITKRKHLLLLTKKLQGEQDQEKPEGSSYLKANVYGREKEKNEMVDYLLSDRSSGSVGNTCVIAIVGVGGIGKTTLAEIVYHDERVKASFELRGWVDYQEGVDAVSLGKIALDSFDEDFLRSDGLTEVISRLRKCLFGKKFLLVLDGIQSPTCWKTLQTCFADAAVGSVVILTTSKLEAALEVRSDLVLHLGLLSPEDSCSLFLDHAFGDGNPNANLEFAPVTKQLVRKIGGLPIAVKKLASVLYDYPDLQAWKELLKFNRSHLLDLSELSLPIQFSERRLYNFRNMVRLEIVGVRRLKLPGEFAELRCLEYLDLSFCGLWRWPNSMSLLTRLHTLKLSFWNYVRPQSVFLYFPNLNYLDIRANSNPATGMLIDVGAMKNLQTLIGFTVNKDSGSNLEELASLPSIRTLSITELQNMVDATYALKANLIRKRHLENLTLRWNQLRVPELEQAPEYLQPTGQPKMLDICERALEYLEPPEQLKMLEILGCPVRRFPDWLGDLSFGMLEVLHLRDCRNCPFLPPLGQLSSLKELSIQGCDNVRSVGNEFYGQCTSYVPFKSLEVLWFVDMANWKEWILLDDERLHFPRLRELYLIHCPKLQQGLPKNLPSLKKIEIIHCDCLVAPLPKIPDNHESVIQEKEKEKDCADIIATSAGEHEEFDFVMDPIINRKVDEPVVDDDKDDRNDECMLDFGYSFDIVKVADASELCNLPDGLKSLRIEGCQFLESLPQFLNNYPDIFELFLVDCCSLKRFADVLHPKSLRTLHIRKCPVLEFIIPLGVHKDFKLLKHLFISSSCESLTSISINLFPRLQTLYIKDCPNLKSLSVATGLRDQNLKLESLKSLPNRFSTLTSLQSLLIDKCPLLESLPDGGLPSSLSLISIAFCYKLTPQKEWKLNTLSSLTCFEVEGGCIGMKSFPDKDLLPRNLKSLRISKLSSLRVLNGTGLQHLTALETLEINCCPGLISLPEGLPSSLTCLCIKESSILTHKLSYKAGTERVKVAHIPNLQIDEDAGHGVNKETIIPRKEVEAASLSFKQPQRKRGF	1145

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30564g00004	1145	Gene3D	-	125	293	IPR027417	-
	Stsc30564g00004	1145	SUPERFAMILY	L domain-like	814	1085	-	-
	Stsc30564g00004	1145	Pfam	NB-ARC domain	147	365	IPR002182	GO:0043531
	Stsc30564g00004	1145	Gene3D	Ribonuclease Inhibitor	356	742	IPR032675	-
	Stsc30564g00004	1145	Gene3D	Ribonuclease Inhibitor	793	973	IPR032675	-
	Stsc30564g00004	1145	PRINTS	Disease resistance protein signature	335	349	-	-
	Stsc30564g00004	1145	PRINTS	Disease resistance protein signature	167	182	-	-
	Stsc30564g00004	1145	PRINTS	Disease resistance protein signature	629	645	-	-
	Stsc30564g00004	1145	PRINTS	Disease resistance protein signature	240	254	-	-
	Stsc30564g00004	1145	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	133	370	IPR027417	-
	Stsc30564g00004	1145	SUPERFAMILY	L domain-like	342	726	-	-
	Stsc30564g00004	1145	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57	887	990	-	-
	Stsc30564g00004	1145	Gene3D	Ribonuclease Inhibitor	974	1094	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30564g00004	Stsc-Chr30564	23082	26847	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30564g00004	168	342	WRKY Transcription Factor Family	AT5G45050	24.432	8.35e-07	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30564g00004	-		-	adu:107477519	1668.29