Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30564g00002 ATGGCTAACAATAATAATTGTTACCATTTTTTCAGCCATGAATCTCAATCTAATTTGATGGTGGTGGTTCTTATTCTTCTTGTTCTTGTTCTTAATCGATGTCATTTCACTTCAGGGCTAGAATCAGAATCTGAGGCCTTACTCAAATGGAAGCAAAGCCTACCTCCACAACCAGTTCTTGATTCATGGGTGAATGTGAATCAAAGTAGTCCATGTTCATGGAGAGGGATCACCTGTGATCCTCAAGGGAGTGTGACTACCATAAACTTAGCCTACACTGGACTTTCAGGTACCCTTCAAAACCTTAACTTATCTGCTTTCCCAAACCTTTTGATTCTTGATCTCAAAACAAATAACCTCACTGGAACTATACCACAAAACATTGGTGTCCTTTCAAAGCTTCAGTTCCTTGATCTTTCCACCAACTTCCTCAATGGAACTTTACCTCTTTCCATTGCAAATTTGACTCAAGTTCATGAACTTGATGTGTCAAGAAATGACATAACAGGAATCTTAGACCCTCTTTTGTTCCCTGATTCAAGTGATGATCCAAGAACTGGCCTAATTAGTATTAGGAATCTTCTGTTCCAAGATACCCTCTTAGGTGGAACACTTCCTAATGAAATTGGTAACATTAGAAACTTGACTTTACTAGCTCTTGATGGTAACAATTTCTATGGTCCTATTCCACCTTCTCTAGGAAATTGCACACATTTAAGTGTTCTAAGACTTAATGAGAATCAATTCTCAGGTACAATACCTCCTAGTATTGGCAAGCTAACTAACTTAACTGATGTGAGGTTTTTCACAAATTACTTGAATGGCACGGTACCGAGAGAATTCGGGAACTTGTCTTCTTTGGTTGTCCTGCATCTTGCTGAGAACAATTTCATTGGTGAGTTGCCACCTCAAGTTTGCAAGAGTGGGAAGCTTGTGAATTTCAGTGCTGCTTATAACGGTTTCACCGGCCCAATTCCGGTTAGCCTTAGAAACTGTCCAAGCTTATACAGAGTAAGAATTGAGTACAACATGCTTACAGGGTATGCTGATGAGGATTTTGGAGTGTATCCTAATCTGACATACATTGATTTCAGCTACAACAGGATTCAGGGTGAGATATCTTCGAATTGGGCCGGCTGCGAAAATTTGCAGGTACTTAGAATGGCTGGGAATTCCATAAGTGGAAACATTCCGGCCGAGGTTTTTCGGCTGAGCCAACTAGCAGAGCTTGATGTATCTTCCAACCAACTTGCTGGAGAGATTCCTCAAGAGATTGGTGATCCATCAACCTTGTATGAACTGAATTTCAGTGGCAATAGACTTTCTGGTGTGATACCAGTCCAAATTGGAAGGCTTTTGGGTTTGCAATCTTTGGACTTGTCAATGAACATGTTATTGGGACAAATCCCAAATACTATTGGTAACTTTAACAACTTGTTGAAACTGAATTTGAGCAACAATGACTTGAATGGCACAATCCCTTACCAGATTGGAAATCTTGCAGCCTTGCAAGATTTCTTGGACTTGAGTTTCAATTCACTTTCAGGGAAAATACCTGATGATCTTGGCAAGCTTGAGAATTTGATAAGCTTGAATATCTCTCATAACAATCTTTCAGGTTCTATTCCTGAGTCCATTACCAAAATGTTGAGCTTGTCATTCATCAACCTTTCTTACAATCATTTGGAAGGTCCTATGCCGAAGGGACGCATATTCAACTCTTCTAGCACAGCAGATTTGAGCAACAACAAAGACTTATGTGGGAATATCAAAGGTTTGCAACCTTGTGATGTCTCAATCAATGTACCTTCTAGCACAAGTAACAAACACAAGGTTTTAGTCCCTCTTCTTGCTTCTTTAGGAGGCGCCTTTTTTGTTTCGTTGGTTTTTGTCGCGATTTTCTTCTTCATCTACAAGCAGCATTCAGGATCATCGAGACAAAACTCGTTGAACATGAAGCCTAATCCGTTCTCAATCTGGTACTTCAATGGCAGAGTTGTGTATGGAGACATAATTGAAGCTACCAAGAATTTCGACAGCGAATACTGCATAGGAGAAGGAGCATTAGGAAAAGTTTACAAAGCAGCTATGAAAGGAGGTCAAGTATTTGCTGTGAAGAAATTGAAATGTGATGAAGAAAACTTAGACAGTGAGAGCATAAAGACATTTAAGAATGAGGTAGCAGCCATGAATGAAACTCGCCACCGGAACATTGTGAAGCTCTATGGATTTTGCTCTGAAGGATTACACACATTCTTGATCTATGAATACATGGATAGAGGAAGCTTAGCAGATATGCTTGGGAATGATCTCAGAGCGTTGGAACTAGACTGGCCTAAGAGAATTGACATTGTTAAAGGCGTGGCGAGTGCTTTGTCTTACATGCATCACGATTGTAACCCACCATTGATTCACAGAGACATTTCAAGCAAGAATGTTTTGTTGTCATCTGATCTTAAAGCTCATGTCTCGGATTTCGGCACTGCCAGGTTCTTGAAGCCTAATTCGCCGATTTGGACAGCGTTCGCAGGCACATATGGTTGTGCTGCTCCAGAACTTGCTTACACAATGGCAGTGACAGAGAAATGTGATGTGTTCAGTTTCGGGGTTTTGGCTTTGGAGGTTCTGATTGGAAGGCACCCTGGTGATCTTGTTTCTTACTTACAAACCACAACAAATCAAAGTATAAACTTCAAAGAGATTTTGGATCCAAGACTCTCACCTCCTAATAATGATGATAAACATGTTCTTAAGGAATTAGCATTAGTTGCTAATCTAAGTCTTTCTTGTTTACAAACAAATCCTCAATCCAGACCAACAATGAGAACTGTGGCTCAGTTGCTTGATATGGACAATAATTCATGA 2865 0.4003 MANNNNCYHFFSHESQSNLMVVVLILLVLVLNRCHFTSGLESESEALLKWKQSLPPQPVLDSWVNVNQSSPCSWRGITCDPQGSVTTINLAYTGLSGTLQNLNLSAFPNLLILDLKTNNLTGTIPQNIGVLSKLQFLDLSTNFLNGTLPLSIANLTQVHELDVSRNDITGILDPLLFPDSSDDPRTGLISIRNLLFQDTLLGGTLPNEIGNIRNLTLLALDGNNFYGPIPPSLGNCTHLSVLRLNENQFSGTIPPSIGKLTNLTDVRFFTNYLNGTVPREFGNLSSLVVLHLAENNFIGELPPQVCKSGKLVNFSAAYNGFTGPIPVSLRNCPSLYRVRIEYNMLTGYADEDFGVYPNLTYIDFSYNRIQGEISSNWAGCENLQVLRMAGNSISGNIPAEVFRLSQLAELDVSSNQLAGEIPQEIGDPSTLYELNFSGNRLSGVIPVQIGRLLGLQSLDLSMNMLLGQIPNTIGNFNNLLKLNLSNNDLNGTIPYQIGNLAALQDFLDLSFNSLSGKIPDDLGKLENLISLNISHNNLSGSIPESITKMLSLSFINLSYNHLEGPMPKGRIFNSSSTADLSNNKDLCGNIKGLQPCDVSINVPSSTSNKHKVLVPLLASLGGAFFVSLVFVAIFFFIYKQHSGSSRQNSLNMKPNPFSIWYFNGRVVYGDIIEATKNFDSEYCIGEGALGKVYKAAMKGGQVFAVKKLKCDEENLDSESIKTFKNEVAAMNETRHRNIVKLYGFCSEGLHTFLIYEYMDRGSLADMLGNDLRALELDWPKRIDIVKGVASALSYMHHDCNPPLIHRDISSKNVLLSSDLKAHVSDFGTARFLKPNSPIWTAFAGTYGCAAPELAYTMAVTEKCDVFSFGVLALEVLIGRHPGDLVSYLQTTTNQSINFKEILDPRLSPPNNDDKHVLKELALVANLSLSCLQTNPQSRPTMRTVAQLLDMDNNS 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30564g00002 954 Gene3D Ribonuclease Inhibitor 275 599 IPR032675 -
Stsc30564g00002 954 SMART LRR_typ_2 107 131 IPR003591 -
Stsc30564g00002 954 SMART LRR_typ_2 525 549 IPR003591 -
Stsc30564g00002 954 SMART LRR_typ_2 236 260 IPR003591 -
Stsc30564g00002 954 SMART LRR_typ_2 452 476 IPR003591 -
Stsc30564g00002 954 SMART LRR_typ_2 404 428 IPR003591 -
Stsc30564g00002 954 SMART LRR_typ_2 284 308 IPR003591 -
Stsc30564g00002 954 SMART LRR_typ_2 155 179 IPR003591 -
Stsc30564g00002 954 Gene3D Phosphorylase Kinase; domain 1 641 757 - -
Stsc30564g00002 954 ProSiteProfiles Protein kinase domain profile. 678 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30564g00002 954 SUPERFAMILY Protein kinase-like (PK-like) 658 948 IPR011009 -
Stsc30564g00002 954 SMART serkin_6 678 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30564g00002 954 Gene3D Ribonuclease Inhibitor 36 115 IPR032675 -
Stsc30564g00002 954 Pfam Protein kinase domain 683 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30564g00002 954 Gene3D Ribonuclease Inhibitor 182 274 IPR032675 -
Stsc30564g00002 954 SUPERFAMILY L domain-like 70 347 - -
Stsc30564g00002 954 FunFam MDIS1-interacting receptor like kinase 2 758 954 - -
Stsc30564g00002 954 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 285 600 - -
Stsc30564g00002 954 FunFam Leucine-rich repeat receptor protein kinase MSP1 640 757 - -
Stsc30564g00002 954 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Stsc30564g00002 954 SUPERFAMILY L domain-like 270 596 - -
Stsc30564g00002 954 PANTHER LEUCINE RICH REPEAT KINASE 2 233 950 - -
Stsc30564g00002 954 FunFam Nuclear pore complex protein NUP107 40 177 - -
Stsc30564g00002 954 Gene3D Ribonuclease Inhibitor 116 181 IPR032675 -
Stsc30564g00002 954 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 186 277 - -
Stsc30564g00002 954 ProSitePatterns Tyrosine protein kinases specific active-site signature. 803 815 IPR008266 GO:0004672|GO:0006468
Stsc30564g00002 954 Pfam Leucine Rich Repeat 527 548 IPR001611 GO:0005515
Stsc30564g00002 954 Gene3D Transferase(Phosphotransferase) domain 1 758 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30564g00002 Stsc-Chr30564 6457 9454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30564g00002 14 851 Receptor kinase-like Gene Family AT4G08850 39.979 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc30564g00002 Pkinase 3.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30564g00002 - - aip:107632555 1608.58