Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30560g00010 ATGATGGATGAGACCCAAAGAAAGCAGAAACAAAGAGAAGTTGAAGAGAGATTGCTTGCACTTTCAGCTACTCTACCAAGTGGTGACTTCAATAATAATAGCAAGATGGACGATAAATCAATCCTAGACAATGCTAGCAACTACGTGAAACAACTCCAACAACGAGTGAGGGAGTTAGAAGAACAAGTTGGTGGTGGATTCAATCGTAGTAACAAAGCTTCCACTTCTTATAATAATGATGAAGAAGTAAACTCTTACTATTACAGAGGAGAAGATGGCGGCGGCGGCGACAATAAAAAAGATAATAATATTATTGTTCCTGAGGTGAAAGCAAAAGTGTTGAAAAACGAAGTGCTCATCATAATCCATTGTGAGAGACAAAAGGGTTTAATGCTCAAAATACTAAGAAAGCTTGAAAATCTTCATCTTTCGGTTCTCAATAATAGTGTCTTGCCATTTGGGAATTCAACCCTCGACATAACCATTGTTGCCCAGATGGGAGATAAATACAACATAACAGTGGATGAATTAGTGGAGAGCCTGAGATTAACTATCTTGACACAATAG 567 0.3792 MMDETQRKQKQREVEERLLALSATLPSGDFNNNSKMDDKSILDNASNYVKQLQQRVRELEEQVGGGFNRSNKASTSYNNDEEVNSYYYRGEDGGGGDNKKDNNIIVPEVKAKVLKNEVLIIIHCERQKGLMLKILRKLENLHLSVLNNSVLPFGNSTLDITIVAQMGDKYNITVDELVESLRLTILTQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30560g00010 188 Coils Coil 42 62 - -
Stsc30560g00010 188 Gene3D - 3 65 IPR036638 GO:0046983
Stsc30560g00010 188 PANTHER BHLH TRANSCRIPTION FACTOR 10 186 - -
Stsc30560g00010 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 65 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30560g00010 Stsc-Chr30560 46114 49799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30560g00010 5 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 35.979 6.12e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30560g00010 - - aip:107616596 242.276