Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30560g00009 ATGGAAGAGTCTGGGGAAAATTGGCCTTCGGATTCTGATTTGGAAATGGGTGATGATGAGAATAATGATAATTGTTATGAAGAAGAAGAAGAAGAAGAATTGGGTTGTGATGATGAATATTTTGGTGAAGATACGTTGTTAGATCCCATGATGGATGAGACCCAAAGAAAGCAGAAACAAAGAGAAGTTGAAGAGAGATTGCTTGCACTTTCAGCTACTCTACCAAGTGGTGACTTCAATAATAATAGCAAGATGGACGATAAATCAATCCTAGACAATGCTAGCAACTACGTGAAACAACTCCAACAACGAGTGAGGGAGTTAGAAGAACAAGTTGGTGGTGGATTCAATCGTAGTAACAAAGCTTCCACTTCTTATAATAATGATGAAGAAGTAAACTCTTACTATTACAGAGGAGAAGATGGCGGCGGCGGCGACAATAAAAAAGATAATAATATTATTGTTCCTGAGGTGAAAGCAAAAGTGTTGAAAAACGAAGTGCTCATCATAATCCATTGTGAGAGACAAAAGGGTTTAATGCTCAAAATACTAAGAAAGCTTGAAAATCTTCATCTTTCGGTTCTCAATAATAGTGTCTTGCCATTTGGGAATTCAACCCTCGACATAACCATTGTTGCCCAGATGGGAGATAAATACAACATAACAGTGGATGAATTAGTGGAGAGCCTGAGATTAACTATCTTGACACAATAG 714 0.3768 MEESGENWPSDSDLEMGDDENNDNCYEEEEEEELGCDDEYFGEDTLLDPMMDETQRKQKQREVEERLLALSATLPSGDFNNNSKMDDKSILDNASNYVKQLQQRVRELEEQVGGGFNRSNKASTSYNNDEEVNSYYYRGEDGGGGDNKKDNNIIVPEVKAKVLKNEVLIIIHCERQKGLMLKILRKLENLHLSVLNNSVLPFGNSTLDITIVAQMGDKYNITVDELVESLRLTILTQ 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30560g00009 237 Coils Coil 91 111 - -
Stsc30560g00009 237 Gene3D - 52 114 IPR036638 GO:0046983
Stsc30560g00009 237 PANTHER BHLH TRANSCRIPTION FACTOR 48 235 - -
Stsc30560g00009 237 MobiDBLite consensus disorder prediction 1 46 - -
Stsc30560g00009 237 MobiDBLite consensus disorder prediction 1 62 - -
Stsc30560g00009 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 114 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30560g00009 Stsc-Chr30560 46114 49799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30560g00009 54 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 35.979 9.15e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30560g00009 - - aip:107616596 295.434