Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30557g00006 ATGTCGCCGGAAATTGACGCCAGGATGCCATCTCCGGTATCTTTCCGTCTCCGTTGGGACGTGTTCCTGAGTTTCCGCGGCACCGACACCAGGGAGGCCTTCACGAAGGACCTCCACGGCGCTCTCGAAGCCGCGGATTCCGCCGCCGCCATTGTTATTGTGTCACCGGACTACGCTTCGTCGCACTGGTGCCTTGAGGAGCTGGCGAAGATCTGCGAGTGCGGTTGGAAGCTGGTGCTGCCGGTTTTCTACCGGGTTGACCCGTCTGATGTACGAAAACAGAAAGGGCCTTTTGAGAAAGCGTTTCGGTTACACTCAGAGAGTGAGAGGTTTAGGAATAAGGTTGGGAGTTGGAGAAGTGCCATGAACAAAGTCGGTGGAATTGCTGGTTGGGTTTTTGATGATCACAATAGCAACAAGGATCAGTTAATTCGAGTTCTGGTGCAAACGGTTTTAAAGCAGATGAGGAACACTCCGTTGACAGTGGCACAATATGCAGTTGGGCTTGATGACAGAATTGCAGAGCTAAGGAAGTTACTTGATGTAAAATCCAATGATGTAAAAGTGATAGGATTGTATGGAATGGGAGGGGTTGGTAAGACAACTCTTGCCAAGGGACTCTTCAACAACCTTGTTGATAATTTTGATAGACGCAGCTTCATCTCAAGTGTTAGAGAAGTTGCAAACAATGAAGATGGGATGGTTTCACTCCAGAGAAAAATTCTTGGTGATCTTTCCCCTGTAGTTGAGACTCACATCAATGATGTCAATGCTGGTATTTCTGCAATCAAAGGAATTGTAGAGGAAAACCGAGTTCTGGTTTTTCTTGATGATGTTGATGATGTGAAACAGCTTGAGTTCTTGATTGGAAAGAGAGAATGGTTTTCTAAAGGAAGCCGTGTCGTGGTTACTACGCGAAACAGAACTGTTTTAGCAGAGAGTCATGTTAATTTGAACTATGAGGTGAAGGAATTGAAAGAGTCTCAAGCGCTTGAATTGTTCTGTTACCATTCCATGAGAAGAAAGGCTCCTTCTGCTGATGGTGGTTTTCTCAATCTCTCAGAACAAATTGTGTCCCTCACAGGAGGATTGCCTCTGGCTTTGGAAGTCTTCGGCTCGTTCCTATTCGATAAGAGGACAATTAACGAATGGAAAGACGCGCTGTCGAAGCTGAAACGGATTCGGCCAGATAGTCTTCAAGGTGCTCTGAAGATCAGCTTTGATGGATTGGATGAACAAGACAAGTGTGTGTTCCTTGACATTGCTTGCTTGTTAGTGCAAATGGAAATGAAGAGAGATTACGTGATTGATATACTGAATGGTTGTGGTTTTAGAGGGGAGATTGCAATAACAGTTCTAACTACAAAGTGTTTGATTAAGATCATTAAGGATGGTGTAGTGTGGATGCATGATCAGGTTAGAGACATGGGAAGGCAAATAGTTCAAAATCAAAGCATTGTAGATTGTGGTATGCGTAGCAGGTTATGGGATCGCCATGAAATCTTGGGTGTCTTGAAGAATAAGAAGGGAACAAGAAAAGTTGAAGGTATTGTCCTTGATTGTGTAAAGAGGAGTCTGGCAAAACCCAGAGACCGTACTGCTGAAGAAATTACCTGGGACAATTTTCGACAAATGCCAGGTTACAAAACAGCATCAGCATATGTGAAGGCAAAGTACAAGAACTATGTGGAGCATAGAGAAGAGAAAGCAAAAGAACTTTCACTTGATACAAAGGAATTCCAACCAATGCTTTCATTAAGGTTGCTTCAAATTAACTATTCAAGACTTGAAGGACAAGGTAAATATCTCCCTCAAGGAATAAAGTGGTTACAATGGAAACAATGTCCTCTGAAGAACATGCCTCGTTCCTATTATCCATTGGAGCTTGCCGTGCTTGATCTCTCAGAAAGCAAGATTGAAACACTCTGGGGAAAGCATCATAACAAGGTAGCTGAGTGCCTGATTGTTTTAAACCTCTCCAATTGCCACCATTTAGTTGCAATTCCAGATTTAACTGGTTACCATTGTCTAGAAAAGATTGTGTTGGAAAACTGCACTGTTCTAACAGGGATTCATGAATCACTTGGAAATCTAAGTACCCTGGTTCACTTGAACTTAGGCACCTGCTATAACCTTGTTGAGTTACCAAGTGATGTCTCTGGGTTGAAACATCTTGAGGACTTGATTCTTTCTGGCTGCCGGAAATTGAAGGCATTACCGAATGATCTAAGCTGCTTGGTCTCTTTAAGAAAGCTTCTCGTTGATGAGACTGCCATAACCGAGTTACCTGATTCCATCTTCCACCTTACCAAACTTGAAAAGTTGAGTGCAAGTGGTTGCCATCTTTTGAGAAGGCTACCTAACTGCATTGGGAAGCTCTCTTCTCTGCAAGAATTATTGCTAAACCATACGGCGTTGGACGAGTTGCCGAATTCTATTGGATCTTTGCAGAATCTCGAGAAGCTTGGTTTGGTGGGGTGTAAGTCCCTCTCTATGATTCCAGATTCTGTTGGGACGCTAATTTCATTGACACATTTGTTTTTGGATGTCAGTGGAATCAAAGAGTTGCCTGATTGTATTGGTTCTTTATCATATCTAAGGCAATTGTCTGTTAGTGGCTGCAATTCTCTTGGTGAATTGCCAATGTCAATAAAGGCATTAGTCTCTGTTGTTGAGCTTCAGTTAGATAAGACACCAGTTACCATTTTGCCAGAACAAATTGGGGCCATGAAAATGCTACAAAAGCTTGACATGGCAAATTGTAAAGATCTCAAATCTCTACCTGCATCGATCGGAGACTTGTCGGCTCTTACTACCTTGGACATGTATAAGACTAACATCACTGAATTGCCAGAGTCAATTGGAATGTTGGAAAATCTTGTTCATTTAAGGTTAGATATGTGCAGAGAGCTCCAAAGGCTTCCAAAATCCTTGGGAAATTTGAAATCACTGCGCCGGTTACAGATGAAAGAAACAGCAGTTACACAGCTACCTGATAGCTTTGGGATGCTTTCAAGCCTGGTAAAATTAGACATGGAAAGAAGGTATTACCTCAATAATGATAGAGACAAGAAGAATATTGAAGAACCCGATTCGGCTGCAATCTTAAGCGGATTTTGTAATCTAACCCTGCTGGAAGAGCTAAATGCACATGGATGGAGAATAGCTGGAAAGATCCCAGATGATTTTGAAAAGCTGTCATCACTAGAAACTCTAAATATATGCCACAACAATATTAGCAGCCTTCCAGCCAGCATGAGAGGACTTTACTGTCTTAAAAAGCTTTTGTTGTCAAATTGCAATCAGCTTATGTTTCTGCCACCTCTTCCTTCTAGCTTAGTAGATATTGATGTCGCGAACTGCACTGCATTAAAGCACATATCTGATATTTCAAACTTAGAAAACATAGAGGAGTTGAACCTTACAAATTGTGAAAAGCTGGAAGACATACCAGGAATTGAGAACTTAAAGTCCTTGAGAAGATTGTACATGAGTGGATGCATTAGATGCTGCTATGCTGTGATGAGAAGATTTTCAAAGGTTCTACTTAAAAATTTACGGATTTTGATTATGCCCAGAAGCAAAGGTATCCCAGATTGGATTTCAGGAGAATCAATTGTCTTTTCCAAGAGAAGAAACCGCGAGCTTAAGGAGATTATATGTGCCGGTGTACTTGCTTTCGACAGTATACCTGAAAACCAAAGAGATGCCTTGCAGTTAGTGGATGTTCAGGCAAAAGTCTTTAATTTAACTGATAATGTATATAGCACTACATTTCGCCTGTTAGGTGTGCCTAGGACAAATGAAGACCATATCTTCTTGCACAGATTTGGAGTTCACACTTCATTGGTTCACCAGTTGAAAGATAAATATACCTTGCATTTGACAAAGCGGAATCCACCCTTTGTTCAGGAGTTGGAACTGAAGAACTGCGGAATCCATTTGGTCTTCGAAGGTGACGATGACTATGAAGGAGATGAAGAATCACTTGACGAATGCCAATATTCGGTGTCACAAAAATTAGCCAAGTTCTTCAATTCTTGTCATTGCCCAAGATCGCCCATGCATGTGAAAACAAGCACATCAGATGAACCACTTGAGATTCAGGGTATGACAAGAACAAGCACAGTTCCAGATACATGGATTCGTTCTATCATTTTTAGTGCAATACTTTTGTGTGCTCTGAGCTATTTATATTTCAGATACCTCAATTTTTAA 4218 0.4168 MSPEIDARMPSPVSFRLRWDVFLSFRGTDTREAFTKDLHGALEAADSAAAIVIVSPDYASSHWCLEELAKICECGWKLVLPVFYRVDPSDVRKQKGPFEKAFRLHSESERFRNKVGSWRSAMNKVGGIAGWVFDDHNSNKDQLIRVLVQTVLKQMRNTPLTVAQYAVGLDDRIAELRKLLDVKSNDVKVIGLYGMGGVGKTTLAKGLFNNLVDNFDRRSFISSVREVANNEDGMVSLQRKILGDLSPVVETHINDVNAGISAIKGIVEENRVLVFLDDVDDVKQLEFLIGKREWFSKGSRVVVTTRNRTVLAESHVNLNYEVKELKESQALELFCYHSMRRKAPSADGGFLNLSEQIVSLTGGLPLALEVFGSFLFDKRTINEWKDALSKLKRIRPDSLQGALKISFDGLDEQDKCVFLDIACLLVQMEMKRDYVIDILNGCGFRGEIAITVLTTKCLIKIIKDGVVWMHDQVRDMGRQIVQNQSIVDCGMRSRLWDRHEILGVLKNKKGTRKVEGIVLDCVKRSLAKPRDRTAEEITWDNFRQMPGYKTASAYVKAKYKNYVEHREEKAKELSLDTKEFQPMLSLRLLQINYSRLEGQGKYLPQGIKWLQWKQCPLKNMPRSYYPLELAVLDLSESKIETLWGKHHNKVAECLIVLNLSNCHHLVAIPDLTGYHCLEKIVLENCTVLTGIHESLGNLSTLVHLNLGTCYNLVELPSDVSGLKHLEDLILSGCRKLKALPNDLSCLVSLRKLLVDETAITELPDSIFHLTKLEKLSASGCHLLRRLPNCIGKLSSLQELLLNHTALDELPNSIGSLQNLEKLGLVGCKSLSMIPDSVGTLISLTHLFLDVSGIKELPDCIGSLSYLRQLSVSGCNSLGELPMSIKALVSVVELQLDKTPVTILPEQIGAMKMLQKLDMANCKDLKSLPASIGDLSALTTLDMYKTNITELPESIGMLENLVHLRLDMCRELQRLPKSLGNLKSLRRLQMKETAVTQLPDSFGMLSSLVKLDMERRYYLNNDRDKKNIEEPDSAAILSGFCNLTLLEELNAHGWRIAGKIPDDFEKLSSLETLNICHNNISSLPASMRGLYCLKKLLLSNCNQLMFLPPLPSSLVDIDVANCTALKHISDISNLENIEELNLTNCEKLEDIPGIENLKSLRRLYMSGCIRCCYAVMRRFSKVLLKNLRILIMPRSKGIPDWISGESIVFSKRRNRELKEIICAGVLAFDSIPENQRDALQLVDVQAKVFNLTDNVYSTTFRLLGVPRTNEDHIFLHRFGVHTSLVHQLKDKYTLHLTKRNPPFVQELELKNCGIHLVFEGDDDYEGDEESLDECQYSVSQKLAKFFNSCHCPRSPMHVKTSTSDEPLEIQGMTRTSTVPDTWIRSIIFSAILLCALSYLYFRYLNF 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30557g00006 1405 Gene3D Ribonuclease Inhibitor 557 889 IPR032675 -
Stsc30557g00006 1405 SMART till_3 18 128 IPR000157 GO:0007165
Stsc30557g00006 1405 ProSiteProfiles TIR domain profile. 1 152 IPR000157 GO:0007165
Stsc30557g00006 1405 Gene3D Ribonuclease Inhibitor 1113 1190 IPR032675 -
Stsc30557g00006 1405 Gene3D - 14 153 IPR035897 -
Stsc30557g00006 1405 Pfam TIR domain 47 157 IPR000157 GO:0007165
Stsc30557g00006 1405 ProSiteProfiles Leucine-rich repeat profile. 1068 1089 IPR001611 GO:0005515
Stsc30557g00006 1405 Gene3D - 324 411 IPR042197 -
Stsc30557g00006 1405 Pfam NB-ARC domain 176 393 IPR002182 GO:0043531
Stsc30557g00006 1405 PRINTS Disease resistance protein signature 266 280 - -
Stsc30557g00006 1405 PRINTS Disease resistance protein signature 908 924 - -
Stsc30557g00006 1405 PRINTS Disease resistance protein signature 189 204 - -
Stsc30557g00006 1405 PRINTS Disease resistance protein signature 361 375 - -
Stsc30557g00006 1405 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 131 IPR035897 -
Stsc30557g00006 1405 SUPERFAMILY L domain-like 469 921 - -
Stsc30557g00006 1405 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 867 IPR044974 GO:0006952
Stsc30557g00006 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 421 IPR027417 -
Stsc30557g00006 1405 SUPERFAMILY L domain-like 881 1185 - -
Stsc30557g00006 1405 Gene3D - 154 320 IPR027417 -
Stsc30557g00006 1405 Gene3D Ribonuclease Inhibitor 890 1112 IPR032675 -
Stsc30557g00006 1405 SMART LRR_typ_2 887 910 IPR003591 -
Stsc30557g00006 1405 SMART LRR_typ_2 840 863 IPR003591 -
Stsc30557g00006 1405 SMART LRR_typ_2 934 957 IPR003591 -
Stsc30557g00006 1405 SMART LRR_typ_2 1066 1089 IPR003591 -
Stsc30557g00006 1405 SMART LRR_typ_2 793 816 IPR003591 -
Stsc30557g00006 1405 SMART LRR_typ_2 746 769 IPR003591 -
Stsc30557g00006 1405 SMART LRR_typ_2 981 1003 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30557g00006 Stsc-Chr30557 39139 47271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30557g00006 77 869 WRKY Transcription Factor Family AT4G12020 29.543 3.91e-72 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30557g00006 - - adu:107489074 2330.44