Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30556g00011 ATGGATGTTTCTCATGGATCTCCAGGCAGATCGGATGCGCCATCTATTGCTGCGGTTGTGAGTTCAAGGTCTTGGCCTTCAATATCCTGCTATAGAGCCGCGGTTTGGACTCAGTCACCAAGAGTTGAGATGATTCAGTCTTTGTTTAAGCCAGTTCCTTCTGTTACTGGTAATAAAGATGAAGGTATCATCCGGGAGCTGATTATGGACTTCTATGAAACTTCAAAACAAAGGAAGCCTCAGCAAATTATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCATCAAGGTGTTGAATGAAGAGTTAGTTCCAATCATAGAGGCCTGCAAATATCTTGATGAGAAGTGGTCTCCCAAGTTCACTTTTATTGTTGCTCAGAAGAATCATCACACTAAGTTCTTTAAGGACAATGCTCCAGATAATGTTCCACCAGGAACTGTTGTTGACACCCAAATCTGTCATCCCAAGAACAATGACTTTTACATGTGTGCTCATGCTGGGAAGATTGGAAGTATTATTGGAACAACTCGACCTACTCATTACCATGTTTTGCATGATGAAATTGGATTCTCTGCTGATGATCTGCAAGAATTAGTTCATTCTCTTTCTTATGTGTAA 621 0.4074 MDVSHGSPGRSDAPSIAAVVSSRSWPSISCYRAAVWTQSPRVEMIQSLFKPVPSVTGNKDEGIIRELIMDFYETSKQRKPQQIIIFRDGVSESQFIKVLNEELVPIIEACKYLDEKWSPKFTFIVAQKNHHTKFFKDNAPDNVPPGTVVDTQICHPKNNDFYMCAHAGKIGSIIGTTRPTHYHVLHDEIGFSADDLQELVHSLSYV 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30556g00011 206 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 206 - -
Stsc30556g00011 206 SMART Piwi_a_2 1 206 IPR003165 GO:0003676
Stsc30556g00011 206 Pfam Piwi domain 1 206 IPR003165 GO:0003676
Stsc30556g00011 206 Gene3D - 1 206 IPR036397 GO:0003676
Stsc30556g00011 206 ProSiteProfiles Piwi domain profile. 1 206 IPR003165 GO:0003676
Stsc30556g00011 206 SUPERFAMILY Ribonuclease H-like 1 205 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30556g00011 Stsc-Chr30556 46833 47988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30556g00011 2 205 Eukaryotic Initiation Factors Gene Family AT5G43810 47.887 3.67e-57 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30556g00011 K11593 - psom:113295088 323.168