Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30556g00008 ATGATTACAAGTTGTGATGAGTTTTCTAGGTGTGATGTGTATAGCTTTGGGGTTATATTGTGGGAGCTCTCTACCCTGCAGCAACCATGGGGAGGGATGAATCCGATGCAAGTTGTTGGTGCTGTTGGTTTCCAACATCGCCGTCTTGACATTCCAGATGATGTGGACCCTGCAGTTGCAGATATTATCAGGCAATGCTGGCAGACAGATCCCAAGTTGAGACCCACATTTACCGAAATCATGGCTGCTTTAAAGCCATTGCAGAAGCCCATTACTGGTTCTCAAGTGCTAAGAACAAGTGCTCAGTCATCTAGAGTTGCCGAAGACCCCGCAAGATAG 339 0.469 MITSCDEFSRCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPAVADIIRQCWQTDPKLRPTFTEIMAALKPLQKPITGSQVLRTSAQSSRVAEDPAR 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30556g00008 112 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 11 94 - -
Stsc30556g00008 112 Pfam Protein tyrosine and serine/threonine kinase 9 84 IPR001245 GO:0004672|GO:0006468
Stsc30556g00008 112 SUPERFAMILY Protein kinase-like (PK-like) 10 89 IPR011009 -
Stsc30556g00008 112 ProSiteProfiles Protein kinase domain profile. 1 88 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30556g00008 112 Gene3D Transferase(Phosphotransferase) domain 1 4 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30556g00008 Stsc-Chr30556 29251 30455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30556g00008 10 104 MAP Kinase Kinase Kinase AT1G73660 76.842 3.67e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc30556g00008 PK_Tyr_Ser-Thr 1.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30556g00008 - - gmx:100780884 186.808