Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30552g00010 ATGTTCGATGGATTGCCATCATCATCAGACCACTTCCACCAATTCATAGCACCAACAACAACCACAAGGACCACCACCACCGCCACCACCACCACCACTACTACTCTTCCTTTTCATAATCATCATCACTTATCATCATCATCATCATTCTCCCCACTACTCCATCATGCTTCTCTAACCCCCACCAACACCAACACCTTCCTACCCTTTGACCCTTATAACCCTCATCACCATCACCATCACCATCATAATCACATTATTCCTCTACTCCAACAACAAGAACAACCAAATGCCACACTTTCTTCACTCAATAACAACAACAACATATTATTCCAGAGTGCTACTACTGATGATGTAGATGAAAGAGATCAAACACAGTTATTACCCAACGACTTGGTTGACTCTTCATCATGGAGCAACGATGAAGTGGTTGCACTCTTGAGGATCAGATCAAGCATGGACTCTACTTGGTTCCCTCAACTCACTTATTGGGACCATGTCTCTAGAAAGCTAGGAGAGCTTGGATTTAAGAAGAGTGGTGACAAGTGTAAGGAGAAATTCGAAGATGAGACAAGGTATTTCAACAACTACGCCAAGAACAATAGTTACAGGTTTCTTAATGAGCTTGAAGAGCTTTATCAAGCTGATAATCATCGTAATCAAAGCTCTATAGTAGAGAACCAAGATCATGTTGTGACTGAAAATACCCAAGATTTCGAGCACCCATTTAATGCCGGAGAAGAAGAAGAAGAAGAGGAAGAGGAGAGTTCAAGAGATGACAAGTCAGTGAAAGAACAATGTGAAGAAGAAGAAGAAGACAGTAAGAGTGAGAAGAAGAAGATGACAAGGAAGAGGAAGAAGCATTGCAGGTTTGAGATGTTGAAGGGTTTCTGTGAGAGCATTGTGAACAACATGATGGCTCAGCAAGAAGAGATACATAACAAGCTCATTCAAGACATGCTCAGAAGAGATCAAGAGAAGCTTCAGAGAGAGGAAGAATGGAAGAGGCAAGAGACTGAAAGGATGAACAAGGAGCTCCAGATTATGGCCCAAGAACAAGCCATTGCAGGTGATAGGCAAGCCTCCATCATCGAATTCTTGAAGAAATACACAGCAACAACAGCAAGCCCTAATGATAATCCTTCTTCTTCTGGTGGAGACAACAACAATCTTGAACCAACACCTCCTTCTTCTTCCAATCTGATTCTTCCAACTCATCAAATTCAAAACCCTAGCTCCATTATAAGTGACACATTATTGCAAGTACCGCAAGTACCTTCTTCTTCCAACAACACTACTACTAGTTCTTCCTCCCTCAACCTCCAAGATCATATTCCACCTGAGCAGTCAAATTCAATTTCAACCGTGCTTGTTAAGCCTCTTCATCAGAAAGAGAGTAATAATAATAATAATGATGTTGGGAGAAGATGGCCAAGAGATGAAGTTATGGCTCTGATAAACCTTAGATGTGAGAGTCTTAATAAGATGAACAATAATAATGGTAGTGAAGAGAGGGAAATTGGGAACAATAATAATAAGGTTCCTCTATGGGAGAGAATCTCACAAGGGATGTCAGATTTGGGATACAAGAGAAGTGCAAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTTAATAAGAAAAGGTCCATTGATTCAAGGACTTGTCCCTACTTCCATCAACTCAAGACTCTCTATGACGAAGGAAGGCTTGTTCATCAACCGGAGACCACGCCGGAGCAAGTGGTTCCTCCGGTGAGGTCTACTCATGAGAAAACTTTGATGCAAGTTCCACCATTGAATTTTGGTTAG 1836 0.4129 MFDGLPSSSDHFHQFIAPTTTTRTTTTATTTTTTTLPFHNHHHLSSSSSFSPLLHHASLTPTNTNTFLPFDPYNPHHHHHHHHNHIIPLLQQQEQPNATLSSLNNNNNILFQSATTDDVDERDQTQLLPNDLVDSSSWSNDEVVALLRIRSSMDSTWFPQLTYWDHVSRKLGELGFKKSGDKCKEKFEDETRYFNNYAKNNSYRFLNELEELYQADNHRNQSSIVENQDHVVTENTQDFEHPFNAGEEEEEEEEESSRDDKSVKEQCEEEEEDSKSEKKKMTRKRKKHCRFEMLKGFCESIVNNMMAQQEEIHNKLIQDMLRRDQEKLQREEEWKRQETERMNKELQIMAQEQAIAGDRQASIIEFLKKYTATTASPNDNPSSSGGDNNNLEPTPPSSSNLILPTHQIQNPSSIISDTLLQVPQVPSSSNNTTTSSSSLNLQDHIPPEQSNSISTVLVKPLHQKESNNNNNDVGRRWPRDEVMALINLRCESLNKMNNNNGSEEREIGNNNNKVPLWERISQGMSDLGYKRSAKRCKEKWENINKYFRKTKDVNKKRSIDSRTCPYFHQLKTLYDEGRLVHQPETTPEQVVPPVRSTHEKTLMQVPPLNFG 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30552g00010 611 Gene3D - 138 196 - -
Stsc30552g00010 611 Gene3D - 477 549 - -
Stsc30552g00010 611 MobiDBLite consensus disorder prediction 424 448 - -
Stsc30552g00010 611 MobiDBLite consensus disorder prediction 1 29 - -
Stsc30552g00010 611 Pfam Myb/SANT-like DNA-binding domain 475 572 IPR044822 -
Stsc30552g00010 611 Pfam Myb/SANT-like DNA-binding domain 136 201 IPR044822 -
Stsc30552g00010 611 Coils Coil 264 287 - -
Stsc30552g00010 611 MobiDBLite consensus disorder prediction 374 404 - -
Stsc30552g00010 611 ProSiteProfiles Myb-like domain profile. 130 191 IPR001005 -
Stsc30552g00010 611 MobiDBLite consensus disorder prediction 12 29 - -
Stsc30552g00010 611 MobiDBLite consensus disorder prediction 257 279 - -
Stsc30552g00010 611 ProSiteProfiles Myb-like domain profile. 469 544 IPR001005 -
Stsc30552g00010 611 PANTHER FI21293P1 85 588 - -
Stsc30552g00010 611 SMART sant 134 193 IPR001005 -
Stsc30552g00010 611 SMART sant 473 546 IPR001005 -
Stsc30552g00010 611 CDD GT1 475 551 - -
Stsc30552g00010 611 MobiDBLite consensus disorder prediction 239 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30552g00010 Stsc-Chr30552 36753 39029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30552g00010 138 574 Trihelix Transcription Factor Family AT5G28300 41.152 1.29e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc30552g00010 Myb_DNA-bind_4 3.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30552g00010 - - aip:107645832 751.51