Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30552g00009 ATGGGAAAGGCAGGTAAATGGATTAGAAACTTTCTTATGGGGAAAAAGGAAGATAAGTACAAGAAGATTGATGCAGTCTGTGCCGAGAGTAAGAGCACTGCAATGGATAGTCCCAAAGTGAAGCGCAGATGGAGCTTCGGAAGACTATCAATGGGAAGAACATCAGGCAAGGTAGCAGGGCATAAATTCTCGATATCTTTTGACTCCGGTGACTCTGCTAAATCGCAAGCTCAGCCTCCAAGGAGGAGTCTTCCAATAGTAGAGTTCAAGGCTTCTATCAACACAAAATCTAAAAACTCTGCAGCTACAATGATTCAAGCTGCCTTCCGCTCGTATCTGGCTAGGAAAGCATTGCATGCTTTAAGGGGATTAGTGAAGATACAAGCACTAGTGAGGGGTCACCTTGTAAGGAAACAAACAACCGCTACACTGCGCAGCATGCATGCGTTGATGGCCATACAAGTTAGAGCTCGGATTCAACGAATTCAGATGGTAGAGGAATCAAATCTTCATGGAAAACAGCCTGTGCAACACACACAAATTCCACACAGAAGAGAATCGAATGATATGACCGTGGAAGAAATGCTGGAGGCTTTGAAAAGCAGAAGTCAGTCGCTTGATCGGTCGCAAGTTAAGGGAATAAAGCATGAATCCATGGCATTCTATTCGAAGCACAAGTCAGTTTCAGAAAGACAACTTGAGTACAATGACAACAGTTTAATCACAGCACCCAACAGCCCAGAAAACTACTGGGGCTTGTCGGAATATAACACCACAGCAATGGCCGTGTCAACTCCTCGGCGATCTCACCGGCAACCACAGTCGCCAAATTTCATGAACAATACAGTGTCTTCAAAGGCAAAAGCAAGGTCTCAGAGTGAACCAAAGCAACGACCCAGACGTGGAAAGAAGCAGAGAAGCAAGTCCCCAGAATCTAGCAAAGAACCTAGTACCTCGCATAATGGTCCAAGGCAAAAGCCGCACTTAAACTCGTCACGCTTTGACCTTGGAACATTAGACCATTGGGTTGTTAACCTTTATCGGTCAACAGCGAAGGACAGCGAGCGCAATTCTTTTGGCAGCAGCACGGTGACAAGTGATTCCTACTATTGA 1113 0.4546 MGKAGKWIRNFLMGKKEDKYKKIDAVCAESKSTAMDSPKVKRRWSFGRLSMGRTSGKVAGHKFSISFDSGDSAKSQAQPPRRSLPIVEFKASINTKSKNSAATMIQAAFRSYLARKALHALRGLVKIQALVRGHLVRKQTTATLRSMHALMAIQVRARIQRIQMVEESNLHGKQPVQHTQIPHRRESNDMTVEEMLEALKSRSQSLDRSQVKGIKHESMAFYSKHKSVSERQLEYNDNSLITAPNSPENYWGLSEYNTTAMAVSTPRRSHRQPQSPNFMNNTVSSKAKARSQSEPKQRPRRGKKQRSKSPESSKEPSTSHNGPRQKPHLNSSRFDLGTLDHWVVNLYRSTAKDSERNSFGSSTVTSDSYY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30552g00009 370 MobiDBLite consensus disorder prediction 262 335 - -
Stsc30552g00009 370 MobiDBLite consensus disorder prediction 314 332 - -
Stsc30552g00009 370 PANTHER IQ-DOMAIN 5-RELATED 1 323 - -
Stsc30552g00009 370 MobiDBLite consensus disorder prediction 350 370 - -
Stsc30552g00009 370 Pfam Protein of unknown function (DUF4005) 260 331 IPR025064 -
Stsc30552g00009 370 Gene3D - 96 150 - -
Stsc30552g00009 370 ProSiteProfiles IQ motif profile. 122 149 IPR000048 GO:0005515
Stsc30552g00009 370 MobiDBLite consensus disorder prediction 349 370 - -
Stsc30552g00009 370 Pfam IQ calmodulin-binding motif 100 118 IPR000048 GO:0005515
Stsc30552g00009 370 Pfam IQ calmodulin-binding motif 125 139 IPR000048 GO:0005515
Stsc30552g00009 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 141 IPR027417 -
Stsc30552g00009 370 SMART iq_5 97 119 IPR000048 GO:0005515
Stsc30552g00009 370 SMART iq_5 120 141 IPR000048 GO:0005515
Stsc30552g00009 370 MobiDBLite consensus disorder prediction 262 290 - -
Stsc30552g00009 370 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30552g00009 Stsc-Chr30552 27014 29237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30552g00009 1 324 IQD Protein Family AT4G14750 38.576 3.62e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30552g00009 - - gmx:100781320 387.882