Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30552g00007 ATGGAGCCCCCTCAGCTCCCTTGTCACACTAAAACCCTTCCTGCTGAATTCTTCAAAGTTTACTTGCCCCAAACAAGTTCTACTCACTTGCGCATACCAAAGGCTTTCAGCGCCAAGTTCATCAACGGAAAAATTGCAAGAAAGGTCGCTGTTGTAGATCATGAAGGAAACTCTTGGGATGTTGAGTTAAAGAAGATGGAGGATGGATCATTGGTCTTCAAGAATGGGTGGCAAGATTTTGCTAGAGACAAGTGTTTGGAACAAGCTGATTTCTTGGTGTTTGGGTATGATGGCAAGTCCAAGTTTCATGTGAAGATATTTTCCAAAAGTGGATGCAGAAAAGAAGCTGCAAATGGTAGCAGGAAACTTGACCCCATTGTGATCTCGGATGATGAAGATTCTGATCATCAGAACAGTAAAAGAAAGCAAAGGAAACTTTCACCAACATCAGTACTCATAGTGAATGAGAAACCTCACTCAAAAAAGGAAGGAACTATTGTGGGGAAATCAAAAGGAGCTAAGCGTGAGAGCAAGGCATCTGCTGGCCTTGTGAAGGACCCTCATTTTGTGATCCCTATGTCACACTGGAGAATGAGAAGAGTGGAAATTCCTAGAAGAGTAATGAAAGAATTGAACATCAGCCTAAAGTCAAGGATTAAATTGAGAGACGAGAATGACAAGCTATGGCCGGTGAAGATCACCACGACGGGCAGGCGCCACTACTTGGCAGATGGGTGGTCTAGGTTTTGGCAGGCTAAAAGTATTGAAGAGGGCAACCTTTGCGATTTCAAGTTTGTTGTTGGCAAAGCAAATAGTGCTGAAGAACTTCTTGTGCGAGTACAGTCACCTTAA 852 0.4331 MEPPQLPCHTKTLPAEFFKVYLPQTSSTHLRIPKAFSAKFINGKIARKVAVVDHEGNSWDVELKKMEDGSLVFKNGWQDFARDKCLEQADFLVFGYDGKSKFHVKIFSKSGCRKEAANGSRKLDPIVISDDEDSDHQNSKRKQRKLSPTSVLIVNEKPHSKKEGTIVGKSKGAKRESKASAGLVKDPHFVIPMSHWRMRRVEIPRRVMKELNISLKSRIKLRDENDKLWPVKITTTGRRHYLADGWSRFWQAKSIEEGNLCDFKFVVGKANSAEELLVRVQSP 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30552g00007 283 Gene3D - 10 112 IPR015300 -
Stsc30552g00007 283 PANTHER B3 DOMAIN-CONTAINING 185 265 - -
Stsc30552g00007 283 CDD B3_DNA 17 108 IPR003340 GO:0003677
Stsc30552g00007 283 ProSiteProfiles B3 DNA-binding domain profile. 15 110 IPR003340 GO:0003677
Stsc30552g00007 283 SMART B3_2 189 274 IPR003340 GO:0003677
Stsc30552g00007 283 SMART B3_2 17 110 IPR003340 GO:0003677
Stsc30552g00007 283 ProSiteProfiles B3 DNA-binding domain profile. 186 283 IPR003340 GO:0003677
Stsc30552g00007 283 MobiDBLite consensus disorder prediction 123 178 - -
Stsc30552g00007 283 Gene3D - 167 281 IPR015300 -
Stsc30552g00007 283 SUPERFAMILY DNA-binding pseudobarrel domain 186 266 IPR015300 -
Stsc30552g00007 283 MobiDBLite consensus disorder prediction 156 178 - -
Stsc30552g00007 283 MobiDBLite consensus disorder prediction 123 142 - -
Stsc30552g00007 283 CDD B3_DNA 187 266 IPR003340 GO:0003677
Stsc30552g00007 283 Pfam B3 DNA binding domain 17 109 IPR003340 GO:0003677
Stsc30552g00007 283 Pfam B3 DNA binding domain 192 277 IPR003340 GO:0003677
Stsc30552g00007 283 SUPERFAMILY DNA-binding pseudobarrel domain 16 112 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30552g00007 Stsc-Chr30552 21158 22612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30552g00007 16 282 B3 DNA Binding Superfamily AT5G66980 30.519 6.29e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30552g00007 B3 2.1e-12 CL0405